obsidian

obsidian is a skill for Claude Code, Codex from AtomicBot-ai/atomic-agent. It costs 20 tokens per session (1,185 once invoked), scanned A, original, MIT.

Instructions for reading, searching, and creating Markdown notes in an Obsidian vault, which is a folder of notes stored on disk.

In plain words
What is it for?
Use them to find notes, read their contents, and create or update Markdown files in the configured vault.
Why use it?
They let an agent work with the vault directly without requiring the Obsidian app to be open.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use them to find notes, read their contents, and create or update Markdown files in the configured vault.

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Install with agentmods
npx agentmods add skills/atomicbot-ai/atomic-agent/obsidian
About the project

Atomic Agent is a local-first AI agent that runs its control loop and state on a user's machine while using local or cloud models. It drives browsers, edits files, runs approved commands, remembers context, schedules follow-ups, and connects to external tools, with the catalogue providing skills for its use.

AtomicBot-ai/atomic-agent · 3,394 stars · on GitHub · atomicagent.io

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add AtomicBot-ai/atomic-agent --skill obsidian
Clone the repo
git clone --depth 1 https://github.com/AtomicBot-ai/atomic-agent

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for obsidian

README.md
[![agentmods](https://agentmods.dev/badge/skills/atomicbot-ai/atomic-agent/obsidian/github.svg)](https://agentmods.dev/skills/atomicbot-ai/atomic-agent/obsidian)
Your own site
<a href="https://agentmods.dev/skills/atomicbot-ai/atomic-agent/obsidian"><img src="https://agentmods.dev/badge/skills/atomicbot-ai/atomic-agent/obsidian/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for obsidian

Your own site · 80×15
<a href="https://agentmods.dev/skills/atomicbot-ai/atomic-agent/obsidian"><img src="https://agentmods.dev/badge/skills/atomicbot-ai/atomic-agent/obsidian.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 20 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,185 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 2 findings, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high Privilege Escalation · line 57
    Code accesses credential files (SSH keys, AWS credentials, etc.). This could indicate credential theft attempts.
    Fix: Remove references to credential paths. Use environment variables or secrets managers. For docs, use placeholder paths (e.g., /path/to/config). Never load .env or token files in production code paths.
  • medium Rogue Agent · line 3
    Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.
    Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00020 $0.01185
Opus 5.5 $0.00008 $0.00474
Sonnet 5.5 $0.00004 $0.00237
Haiku 4.5 $0.00002 $0.00119

Measured 1mo ago against content hash 31c8c29a5f9e, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

obsidian scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

starter-skills/obsidian/SKILL.md · 136 lines

How it starts

The opening of the file, as written. The whole thing — 136 lines — stays where its author put it; the contents beside it link to each section on GitHub.

obsidian

Operate on the user's Obsidian vault as plain Markdown files. Obsidian itself does not need to be running — the vault is just a directory tree of .md files.

Setup check (lazy — resolve path once, don't re-probe)

The vault path resolves as $OBSIDIAN_VAULT_PATH env var → fallback ~/Documents/Obsidian Vault. Resolve it once when you first need it this conversation; do not re-probe printenv on every turn. Operate on the resolved path directly and map failures:

  • os.fs.list / read errors with ENOENT / "no such file or directory" → Setup playbook → "Vault path does not exist".
  • the path exists but holds no .md files → Setup playbook → "Resolved path is not a real vault".

Vault paths often contain spaces — pass them through os.fs.* tools verbatim, no quoting needed.

Setup playbook (when prerequisites are missing)

When a check fails, the agent's job is to OFFER concrete help and EXECUTE the fix itself — not to dump setup instructions on the user. Use this dialogue shape:

  1. State plainly what is missing.
  2. Offer the most direct remediation the agent can perform via tools.
  3. Wait for the user's reply.
  4. Execute the fix via tools.
  5. Retry the original command; only then proceed.

Vault path does not exist

Reply:

"I couldn't find an Obsidian vault in either $OBSIDIAN_VAULT_PATH or ~/Documents/Obsidian Vault. Send me the absolute path to your vault — I'll verify it and save it to ~/.atomic-agent/.env so I can find it automatically in the future."

When the user replies with a path, verify it exists:

[{ "tool": "os.fs.list", "args": { "path": "<user-supplied-path>" } }]

If it lists .md files, persist the choice:

[{ "tool": "os.fs.write", "args": {
   "path": "~/.atomic-agent/.env",
   "mode": "append",
   "content": "\nOBSIDIAN_VAULT_PATH=<user-supplied-path>\n"
} }]

Then reply: "Vault found and saved. Restart the agent so the env variable is picked up — I'll continue after the restart. (I'm already using the path for the current session.)" Continue using the path in-memory for the current session — no need to wait for restart to serve the user's request.

Read the full file on GitHub · 136 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 136 lines · 20 tokens per session scan A 31c8c29a5f9e

Subscribe to this mod's changes

obsidian is a skill published in the GitHub repository AtomicBot-ai/atomic-agent (3,394 stars, last pushed 2d ago), licensed MIT. It adds 20 tokens to every session and 1,185 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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