Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/atomicbot-ai/atomic-agent/obsidiannpx skills add AtomicBot-ai/atomic-agent --skill obsidiangit clone --depth 1 https://github.com/AtomicBot-ai/atomic-agentWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00020 | $0.01185 |
| Opus 5 | $0.00010 | $0.00593 |
| Sonnet 5 | $0.00004 | $0.00237 |
| Haiku 4.5 | $0.00002 | $0.00119 |
Grade A, and why
obsidian scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 136 lines — stays where its author put it; the contents beside it link to each section on GitHub.
obsidian
Operate on the user's Obsidian vault as plain Markdown files. Obsidian itself does not need to be running — the vault is just a directory tree of .md files.
Setup check (lazy — resolve path once, don't re-probe)
The vault path resolves as $OBSIDIAN_VAULT_PATH env var → fallback
~/Documents/Obsidian Vault. Resolve it once when you first need it
this conversation; do not re-probe printenv on every turn. Operate on the
resolved path directly and map failures:
os.fs.list/ read errors withENOENT/ "no such file or directory" → Setup playbook → "Vault path does not exist".- the path exists but holds no
.mdfiles → Setup playbook → "Resolved path is not a real vault".
Vault paths often contain spaces — pass them through os.fs.* tools verbatim, no quoting needed.
Setup playbook (when prerequisites are missing)
When a check fails, the agent's job is to OFFER concrete help and EXECUTE the fix itself — not to dump setup instructions on the user. Use this dialogue shape:
- State plainly what is missing.
- Offer the most direct remediation the agent can perform via tools.
- Wait for the user's reply.
- Execute the fix via tools.
- Retry the original command; only then proceed.
Vault path does not exist
Reply:
"I couldn't find an Obsidian vault in either
$OBSIDIAN_VAULT_PATHor~/Documents/Obsidian Vault. Send me the absolute path to your vault — I'll verify it and save it to~/.atomic-agent/.envso I can find it automatically in the future."
When the user replies with a path, verify it exists:
[{ "tool": "os.fs.list", "args": { "path": "<user-supplied-path>" } }]
If it lists .md files, persist the choice:
[{ "tool": "os.fs.write", "args": {
"path": "~/.atomic-agent/.env",
"mode": "append",
"content": "\nOBSIDIAN_VAULT_PATH=<user-supplied-path>\n"
} }]
Then reply: "Vault found and saved. Restart the agent so the env variable is picked up — I'll continue after the restart. (I'm already using the path for the current session.)" Continue using the path in-memory for the current session — no need to wait for restart to serve the user's request.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 3d ago First seen · 136 lines · 20 tokens per session scan A 31c8c29a5f9e
obsidian is a skill published in the GitHub repository AtomicBot-ai/atomic-agent (2,438 stars, last pushed yesterday), licensed MIT. It adds 20 tokens to every session and 1,185 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
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