instrument-data-to-allotrope

instrument-data-to-allotrope is a skill for Claude Code, Codex from aws-samples/amazon-bedrock-agents-healthcare-lifesciences. It costs 123 tokens per session (2,419 once invoked), scanned A, original, MIT-0.

A laboratory-data conversion skill that turns instrument files such as PDFs, CSVs, spreadsheets, and text files into Allotrope Simple Model (ASM) JSON or flattened CSV. ASM is a standardized format for laboratory data.

In plain words
What is it for?
Use it to detect instrument types and prepare data for laboratory information systems, data lakes, or downstream analysis.
Why use it?
It helps make output from different laboratory instruments consistent for storage and later analysis.

Skill for Claude CodeCodex ✓ vendor

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to detect instrument types and prepare data for laboratory information systems, data lakes, or downstream analysis.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope
About the project

Healthcare and Life Sciences Agents Toolkit is an AWS library of domain-specific AI capabilities for healthcare and life sciences workflows, including reference agents, reusable skills, and MCP tools. Builders, researchers, clinicians, scientists, and platform teams use it for tasks such as drug research, clinical trials, genomics, and commercialization. The catalogue add-ons expose parts of the toolkit as portable skills and MCP tools for coding assistants and other platforms.

aws-samples/amazon-bedrock-agents-healthcare-lifesciences · 271 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add aws-samples/amazon-bedrock-agents-healthcare-lifesciences --skill instrument-data-to-allotrope
Clone the repo
git clone --depth 1 https://github.com/aws-samples/amazon-bedrock-agents-healthcare-lifesciences

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for instrument-data-to-allotrope

README.md
[![agentmods](https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope/github.svg)](https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope)
Your own site
<a href="https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope"><img src="https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for instrument-data-to-allotrope

Your own site · 80×15
<a href="https://agentmods.dev/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope"><img src="https://agentmods.dev/badge/skills/aws-samples/amazon-bedrock-agents-healthcare-lifesciences/instrument-data-to-allotrope.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 123 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,419 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00123 $0.02419
Opus 5 $0.00062 $0.01210
Sonnet 5 $0.00025 $0.00484
Haiku 4.5 $0.00012 $0.00242

Measured 13d ago against content hash 6167bf1731e5, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

instrument-data-to-allotrope scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

The scan reads SKILL.md. This mod also ships 4 executable files (scripts/convert_to_asm.py, scripts/export_parser.py, scripts/flatten_asm.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

agents_catalog/36-C4LS-example-agent/C4LS/src/skills/instrument-data-to-allotrope/SKILL.md · 281 lines

The source is not reproduced here

Licensed MIT-0

The repository is licensed MIT-0, which this catalogue does not treat as permission to reproduce the file. Read it at the source.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago First seen · 281 lines · 123 tokens per session scan A 6167bf1731e5

Subscribe to this mod's changes

instrument-data-to-allotrope is a skill published in the GitHub repository aws-samples/amazon-bedrock-agents-healthcare-lifesciences (271 stars, last pushed yesterday), licensed MIT-0. It adds 123 tokens to every session and 2,419 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

publication-chart-skill

This skill should be used when the user asks for a publication-quality scientific figure or table, wants help choosing the right chart for results, needs a paper-ready pubfig or pubtab workflow, wants a figure + companion table for a results section, wants an Excel sheet turned into publication-ready LaTeX, or wants…

Galaxy-Dawn/claude-scholar · 77 tokens

csv-export

Export curing simulation results to CSV with node coordinates and displacements. Invoke when user needs CSV output, data export, or result comparison.

Cai-aa/CAE-Agent-Hub · 0 tokens

neqsim-technical-document-reading

Reads and extracts structured engineering data from technical documents (PDFs, Word, Excel, CSV) and engineering images/drawings (P&IDs, vendor datasheets, mechanical arrangements, performance maps). USE WHEN: a user provides engineering documents or images — equipment data sheets, technical requirements, design…

equinor/neqsim · 146 tokens

evo-protein-expression-analysis

Use when populating Excel workbooks for quantitative proteomics tasks - computing expression lookups, group statistics, and log2 fold-change values using Python and writing numeric results via openpyxl while preserving cell formatting. Handles two-sheet workbooks (Task + Data) with 2D protein×sample expression…

OpenLAIR/OpenSkill · 69 tokens

evo-proteomics-excel-formulas

Use when populating Excel workbooks for quantitative proteomics tasks - writing INDEX/MATCH lookups, AVERAGE/STDEV.S group statistics, and log2 fold-change formulas while preserving cell formatting via openpyxl 3.1.5.

OpenLAIR/OpenSkill · 60 tokens

evo-wigner-csv-export

Computes the Wigner function of a bosonic density matrix on a specified phase-space grid using QuTiP and exports the result as a CSV file.

OpenLAIR/OpenSkill · 39 tokens