Skill Claude Code
Validate whether a marker set supports a proposed cell type or cell state and explain the main caveats.
not rated 2 2mo ago A 24 tokens
2Stars on the repository
52Mods indexed here, across every type
2mo agoLast push, which is what freshness is scored on
noneNo LICENSE: all rights reserved, so bodies are not copied
Skill Claude Code
Build positive and negative marker panels for a cell type or state and explain the confidence of the proposed panel.
not rated 2 2mo ago A 25 tokens
Skill Claude Code
Convert between molarity, mass, and volume using molecular weight.
not rated 2 2mo ago A 19 tokens
Skill Claude Code
Look up gene description and location via NCBI Gene (esearch/efetch).
not rated 2 2mo ago A 23 tokens
Skill Claude Code
Advise on normalization for scRNA (library size, log, SCTransform, etc.).
not rated 2 2mo ago A 23 tokens
Skill Claude Code
Map genes across species and explain confidence, ambiguity, and biological caveats.
not rated 2 2mo ago A 19 tokens
paper_triage
31Skill Claude Code
Triage a paper for biological relevance, extract the main claims, and separate evidence-backed takeaways from abstract-only impressions.
not rated 2 2mo ago A 28 tokens
Skill Claude Code
Check whether paralogs or compensatory family members may weaken interpretation of a perturbation target.
not rated 2 2mo ago A 26 tokens
Skill Claude Code
Look up pathway or GO/Reactome/KEGG term definitions and key genes.
not rated 2 2mo ago A 21 tokens
Skill Claude Code
Suggest a control strategy for perturbation experiments, including non-targeting, positive, and interpretation controls.
not rated 2 2mo ago A 27 tokens
Skill Claude Code
Compare gene signatures across perturbations and suggest clustering or grouping.
not rated 2 2mo ago A 18 tokens
Skill Claude Code
Estimate the cell budget and practical coverage needed for a Perturb-seq design.
not rated 2 2mo ago A 24 tokens
Skill Claude Code
Generate a 96- or 384-well plate map for perturbations and replicates.
not rated 2 2mo ago A 23 tokens
Skill Claude Code
Advise on PCR primer design (Tm, length, GC%, avoiding secondary structure).
not rated 2 2mo ago A 22 tokens
Skill Claude Code
Retrieve a lab protocol or SOP from the local knowledge base and summarize the parts that matter for the current experiment.
not rated 2 2mo ago A 27 tokens
Skill Claude Code
Recommend a replicate-aware pseudobulk strategy for single-cell differential expression and explain the design choices.
not rated 2 2mo ago A 26 tokens
Skill Claude Code
Fetch and summarize a PubMed article by PMID (abstract, key methods, key findings).
not rated 2 2mo ago A 24 tokens
Skill Claude Code
Search PubMed for articles by query; return top N PMIDs with titles, year, journal, and link.
not rated 2 2mo ago A 27 tokens
Skill Claude Code
Parse common pipeline log/output and summarize metrics and status.
not rated 2 2mo ago A 16 tokens
Skill Claude Code
Propose safe commands and directory hygiene for running a pipeline.
not rated 2 2mo ago A 18 tokens
Skill Claude Code
Turn single-cell RNA-seq summary metrics into a practical QC checklist with explicit assumptions and threshold recommendations.
not rated 2 2mo ago A 27 tokens
Skill Claude Code
Suggest Scanpy/Python commands for basic scRNA QC (filtering, mito, UMI).
not rated 2 2mo ago A 26 tokens
Skill Claude Code
Generate an sbatch script template for GPU or CPU jobs (Slurm).
not rated 2 2mo ago A 20 tokens
Skill Claude Code
Rank perturbation targets by drugability, pathway relevance, and safety given constraints.
not rated 2 2mo ago A 21 tokens
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