sdrf-annotate-reviewed

sdrf-annotate-reviewed is a skill for Claude Code, Codex from bigbio/sdrf-skills. It costs 75 tokens per session (667 once invoked), scanned A, original, MIT.

A workflow for creating or improving an SDRF with a separate reviewer checking the result. SDRF files describe samples and experimental details for proteomics datasets.

In plain words
What is it for?
Use it when an SDRF must be independently verified before completion or community contribution.
Why use it?
It reduces the risk of unverified annotations by requiring evidence, deterministic checks, independent review, repair, and another review.

Skill for Claude CodeCodex

Written for Claude Code and Codex: shipped in a Claude Code plugin, but also agents/openai.yaml present. Also seen: mentions subagents.

Part of the sdrf-skills plugin — 16 skills, 2 hooks, 1 MCP server shipped together

Good fit Use it when an SDRF must be independently verified before completion or community contribution.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/bigbio/sdrf-skills/sdrf-annotate-reviewed
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add bigbio/sdrf-skills --skill sdrf-annotate-reviewed
Clone the repo
git clone --depth 1 https://github.com/bigbio/sdrf-skills

Made for: Claude Code, Codex.

Or install sdrf-skills, the plugin that ships this one along with the rest of its 16 skills, 2 hooks, 1 MCP server.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for sdrf-annotate-reviewed

README.md
[![agentmods](https://agentmods.dev/badge/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed/github.svg)](https://agentmods.dev/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed)
Your own site
<a href="https://agentmods.dev/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed"><img src="https://agentmods.dev/badge/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for sdrf-annotate-reviewed

Your own site · 80×15
<a href="https://agentmods.dev/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed"><img src="https://agentmods.dev/badge/skills/bigbio/sdrf-skills/sdrf-annotate-reviewed.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 75 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 667 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00075 $0.00667
Opus 5 $0.00037 $0.00333
Sonnet 5 $0.00015 $0.00133
Haiku 4.5 $0.00007 $0.00067

Measured 11d ago against content hash 0ef32896801f, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-10, from the pricing page.

Security

Grade A, and why

sdrf-annotate-reviewed scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/sdrf-annotate-reviewed/SKILL.md · 76 lines

How it starts

The opening of the file, as written. The whole thing — 76 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Reviewed SDRF Annotation

Orchestrate annotation and independent review. Keep producer and reviewer contexts separate; validation by the producer is not review.

1. Produce the SDRF

Run the sdrf:annotate workflow in the current producer context. For an existing artifact, run the applicable sdrf:fix, sdrf:review, or sdrf:techrefine workflows first.

Create an evidence manifest using the schema in ../sdrf-adversarial-review/references/review-contract.md. Include exact source URLs or local paths and map claims to SDRF columns or rows. Mark unavailable evidence explicitly; do not invent citations.

2. Validate and mark pending

Run official template validation plus the repository's check and score tools. Fix deterministic errors before requesting review. Track the final artifact:

python3 <sdrf-skills-root>/tools/review_gate.py track <artifact> --cwd <repo-root>

3. Dispatch an isolated reviewer

Use a fresh subagent, hook agent, or equivalent isolated context. Pass only:

  • the original request and acceptance criteria;
  • the repository-relative SDRF path;
  • the evidence-manifest path;
  • the specification root and pinned revision;
  • deterministic validation outputs; and
  • the path to sdrf-adversarial-review/SKILL.md.

Do not pass the producer transcript, reasoning, suspected issues, or proposed verdict. Instruct the reviewer to use sdrf-adversarial-review, inspect raw artifacts, and distrust producer assertions.

If the platform cannot create an isolated reviewer context, report that the adversarial gate is unavailable. Do not substitute producer self-review and do not claim a passing adversarial review.

4. Repair and re-review

When the reviewer returns blocker or important findings:

  1. Let the producer evaluate each finding against code, specification, and evidence; push back only with concrete counter-evidence.
  2. Apply accepted corrections.
  3. Re-run deterministic validation.
  4. Dispatch a new fresh reviewer. Never ask the original reviewer to rely on its previous verdict.

Read the full file on GitHub · 76 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 76 lines · 75 tokens per session scan A 0ef32896801f

Subscribe to this mod's changes

sdrf-annotate-reviewed is a skill published in the GitHub repository bigbio/sdrf-skills (18 stars, last pushed 4d ago), licensed MIT. It adds 75 tokens to every session and 667 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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