gbif-biodiversity-guide

gbif-biodiversity-guide is a skill for Claude Code from cyanheads/gbif-biodiversity-mcp-server. It costs 81 tokens per session (1,793 once invoked), scanned A, original, Apache-2.0.

A biodiversity research guide explains how to use GBIF, a global index of species occurrence records from museums, field observations, surveys, literature, and other publishers. It covers taxon names, places, dates, source collections, and datasets.

In plain words
What is it for?
It is for mapping where and when a species has been recorded, listing species in a region, reconciling names, and tracing records to their publishers and collections.
Why use it?
It helps distinguish a count of recorded records from a count of animals or plants, and prevents unsupported place searches or incorrect taxon joins.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin.

Part of the gbif-biodiversity-mcp-server plugin — 35 skills, 1 MCP server shipped together

Good fit It is for mapping where and when a species has been recorded, listing species in a region, reconciling names, and tracing records to their publishers and collections.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add cyanheads/gbif-biodiversity-mcp-server --skill gbif-biodiversity-guide
Clone the repo
git clone --depth 1 https://github.com/cyanheads/gbif-biodiversity-mcp-server

Made for: Claude Code.

Or install gbif-biodiversity-mcp-server, the plugin that ships this one along with the rest of its 35 skills, 1 MCP server.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for gbif-biodiversity-guide

README.md
[![agentmods](https://agentmods.dev/badge/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide/github.svg)](https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide)
Your own site
<a href="https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide"><img src="https://agentmods.dev/badge/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for gbif-biodiversity-guide

Your own site · 80×15
<a href="https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide"><img src="https://agentmods.dev/badge/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 81 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,793 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00081 $0.01793
Opus 5.5 $0.00032 $0.00717
Sonnet 5.5 $0.00016 $0.00359
Haiku 4.5 $0.00008 $0.00179

Measured 7d ago against content hash d95fb631f022, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

gbif-biodiversity-guide scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/gbif-biodiversity-guide/SKILL.md · 82 lines

How it starts

The opening of the file, as written. The whole thing — 82 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Scope

GBIF indexes occurrence records (specimens, field observations, literature and survey records) from thousands of publishers, alongside the GBIF backbone taxonomy and other checklists. Access is keyless and read-only. Reach for it to answer where and when a taxon has been recorded, which collections hold it, what a group contains, and where a record came from.

It does not:

  • Resolve a place name. A region is a country code, a stateProvince string taken from a facet, a GADM GID, a latitude/longitude box, or a WKT polygon built from coordinates you already hold.
  • Search occurrence records by free text. Locality descriptions, collector notes, and identification remarks are not searchable; every occurrence filter is a structured Darwin Core field.
  • Measure abundance. Every occurrence count it returns is a number of records.

Identifiers

Identifier Where it comes from Where it goes
Backbone taxonKey taxonKey from gbif_match_species or gbif_bulk_match_species; key from gbif_get_species, gbif_get_species_children, and gbif_get_species_classification; nubKey (not key) on gbif_search_species rows; taxonKey on occurrence rows; a KINGDOM_KEY … SPECIES_KEY bucket's name Occurrence tools, species tools
datasetKey gbif_search_datasets, an occurrence row, a DATASET_KEY bucket Occurrence tools, gbif_get_dataset
Organization key gbif_search_publishers; publishingOrganizationKey on the dataset tools gbif_search_datasets as publishingOrg
Occurrence key gbif_search_occurrences gbif_get_occurrence
GADM GID (ESP, ESP.1_1) The gadm block of gbif_get_occurrence, or a GADM_LEVEL_0_GID … GADM_LEVEL_3_GID bucket gadmGid on the occurrence tools

Facet bucket names are strings. A SPECIES_KEY bucket named "2878688" is the backbone key 2878688: pass it as a number.

Gates

  1. Read matchType before using a matched key. On HIGHERRANK, use taxonKey only when the taxon its notice names is the one you meant. A species name that fell back to its genus or kingdom is not a match for that species.
  2. Choose the region filter for the population you mean. They select different records:
    • country is where the record was made, and includes records without coordinates.
    • stateProvince is the string each dataset wrote, so it misses other spellings of the same region.
    • gadmGid, the latitude/longitude ranges, and geometry are computed from coordinates, so they drop every record that has none.

Read the full file on GitHub · 82 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 7d ago First seen · 82 lines · 81 tokens per session scan A d95fb631f022

Subscribe to this mod's changes

gbif-biodiversity-guide is a skill published in the GitHub repository cyanheads/gbif-biodiversity-mcp-server (1 stars, last pushed 7d ago), licensed Apache-2.0. It adds 81 tokens to every session and 1,793 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-11-01.

Related

gbif-biodiversity-guide compared with skills from other repositories

gbif-biodiversity-guide next to 6 skills from other repositories
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usda-guidecyanheads/usda-mcp-serverSkill113d agoApache-2.0A46Claude Code
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datamolsynthetic-sciences/openscienceSkill4.4ktodayApache-2.0A67Claude Code, Codex
genomic-intelligencesynthetic-sciences/openscienceSkill4.4ktodayApache-2.0A150Claude Code, Codex