Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add cyanheads/gbif-biodiversity-mcp-server --skill gbif-biodiversity-guidegit clone --depth 1 https://github.com/cyanheads/gbif-biodiversity-mcp-serverWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide)<a href="https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide"><img src="https://agentmods.dev/badge/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide"><img src="https://agentmods.dev/badge/skills/cyanheads/gbif-biodiversity-mcp-server/gbif-biodiversity-guide.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00081 | $0.01793 |
| Opus 5.5 | $0.00032 | $0.00717 |
| Sonnet 5.5 | $0.00016 | $0.00359 |
| Haiku 4.5 | $0.00008 | $0.00179 |
Grade A, and why
gbif-biodiversity-guide scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 82 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Scope
GBIF indexes occurrence records (specimens, field observations, literature and survey records) from thousands of publishers, alongside the GBIF backbone taxonomy and other checklists. Access is keyless and read-only. Reach for it to answer where and when a taxon has been recorded, which collections hold it, what a group contains, and where a record came from.
It does not:
- Resolve a place name. A region is a country code, a
stateProvincestring taken from a facet, a GADM GID, a latitude/longitude box, or a WKT polygon built from coordinates you already hold. - Search occurrence records by free text. Locality descriptions, collector notes, and identification remarks are not searchable; every occurrence filter is a structured Darwin Core field.
- Measure abundance. Every occurrence count it returns is a number of records.
Identifiers
| Identifier | Where it comes from | Where it goes |
|---|---|---|
Backbone taxonKey |
taxonKey from gbif_match_species or gbif_bulk_match_species; key from gbif_get_species, gbif_get_species_children, and gbif_get_species_classification; nubKey (not key) on gbif_search_species rows; taxonKey on occurrence rows; a KINGDOM_KEY … SPECIES_KEY bucket's name |
Occurrence tools, species tools |
datasetKey |
gbif_search_datasets, an occurrence row, a DATASET_KEY bucket |
Occurrence tools, gbif_get_dataset |
| Organization key | gbif_search_publishers; publishingOrganizationKey on the dataset tools |
gbif_search_datasets as publishingOrg |
| Occurrence key | gbif_search_occurrences |
gbif_get_occurrence |
GADM GID (ESP, ESP.1_1) |
The gadm block of gbif_get_occurrence, or a GADM_LEVEL_0_GID … GADM_LEVEL_3_GID bucket |
gadmGid on the occurrence tools |
Facet bucket names are strings. A SPECIES_KEY bucket named "2878688" is the backbone key 2878688: pass it as a number.
Gates
- Read
matchTypebefore using a matched key. On HIGHERRANK, usetaxonKeyonly when the taxon its notice names is the one you meant. A species name that fell back to its genus or kingdom is not a match for that species. - Choose the region filter for the population you mean. They select different records:
countryis where the record was made, and includes records without coordinates.stateProvinceis the string each dataset wrote, so it misses other spellings of the same region.gadmGid, the latitude/longitude ranges, andgeometryare computed from coordinates, so they drop every record that has none.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 7d ago First seen · 82 lines · 81 tokens per session scan A d95fb631f022
gbif-biodiversity-guide is a skill published in the GitHub repository cyanheads/gbif-biodiversity-mcp-server (1 stars, last pushed 7d ago), licensed Apache-2.0. It adds 81 tokens to every session and 1,793 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-11-01.
gbif-biodiversity-guide compared with skills from other repositories
| Mod | Type | Stars | Last push | Licence | Scan | Tokens | Works with |
|---|---|---|---|---|---|---|---|
| gbif-biodiversity-guidecyanheads/gbif-biodiversity-mcp-server | Skill | 1 | 7d ago | Apache-2.0 | A | 81 | Claude Code |
| usda-guidecyanheads/usda-mcp-server | Skill | 1 | 13d ago | Apache-2.0 | A | 46 | Claude Code |
| gbif-biodiversityxjtulyc/awesome-rosetta-skills | Skill | 35 | 6mo ago | none | A | 33 | Claude Code, Codex |
| imaging-data-commonssynthetic-sciences/openscience | Skill | 4.4k | today | Apache-2.0 | A | 62 | Claude Code, Codex |
| flow-cytometry-analysissynthetic-sciences/openscience | Skill | 4.4k | today | Apache-2.0 | A | 67 | Claude Code, Codex |
| datamolsynthetic-sciences/openscience | Skill | 4.4k | today | Apache-2.0 | A | 67 | Claude Code, Codex |
| genomic-intelligencesynthetic-sciences/openscience | Skill | 4.4k | today | Apache-2.0 | A | 150 | Claude Code, Codex |