bio-database-evidence

bio-database-evidence is a skill for Claude Code, Codex from foryourhealth111-pixel/Vibe-Skills. It costs 101 tokens per session (640 once invoked), scanned A, original, Apache-2.0.

A research skill for finding and combining evidence from biological databases. It covers information about genes, variants, diseases, pathways, proteins, genetic associations, cell data, and biological interactions.

In plain words
What is it for?
Use it to annotate genes or variants, assess clinical or cancer evidence, map pathways, investigate target–disease links, find protein structures, examine interaction networks, or query reference single-cell data.
Why use it?
It reduces the need to search several specialised biology databases separately and helps connect identifiers and findings across sources.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to annotate genes or variants, assess clinical or cancer evidence, map pathways, investigate target–disease links, find protein structures, examine interaction networks, or query reference single-cell data.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence
About the project

Vibe-Skills is a collection and routing system that helps AI agents discover, select, and coordinate specialized skills for completing tasks. It is intended for agents that need to organize workflows across many installed capabilities. The catalogue entries are skills and an agent belonging to this system.

foryourhealth111-pixel/Vibe-Skills · 3,262 stars · on GitHub

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add foryourhealth111-pixel/Vibe-Skills --skill bio-database-evidence
Clone the repo
git clone --depth 1 https://github.com/foryourhealth111-pixel/Vibe-Skills

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bio-database-evidence

README.md
[![agentmods](https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence/github.svg)](https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence)
Your own site
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bio-database-evidence

Your own site · 80×15
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/bio-database-evidence.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 101 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 640 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00101 $0.00640
Opus 5 $0.00051 $0.00320
Sonnet 5 $0.00020 $0.00128
Haiku 4.5 $0.00010 $0.00064

Measured 13d ago against content hash b7651c5be518, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

bio-database-evidence scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 13d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

bundled/skills/bio-database-evidence/SKILL.md · 44 lines

How it starts

The opening of the file, as written. The whole thing — 44 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Bio Database Evidence

Use This Skill For

Use this skill when the main task is biological database lookup, annotation, or evidence gathering across one or more biological sources:

  • Gene annotation, identifiers, RefSeq, Ensembl IDs, orthologs, VEP, GO, and genomic coordinates.
  • Variant clinical significance, VUS interpretation support, ClinVar review status, cancer mutations, and COSMIC evidence.
  • GWAS Catalog trait associations, rs IDs, p-values, summary statistics, and genetic epidemiology evidence.
  • Pathway mapping, ID conversion, KEGG pathways, Reactome enrichment, disease pathways, and pathway evidence.
  • Target-disease association evidence, tractability, safety, known drugs, and Open Targets evidence.
  • Protein structure evidence from AlphaFold DB or RCSB PDB, including UniProt IDs, mmCIF/PDB downloads, pLDDT, PAE, and structure metadata.
  • Protein-protein interaction evidence, STRING networks, hub proteins, and enrichment evidence.
  • Reference single-cell data lookup from CELLxGENE Census when the user asks for census metadata or expression data, not full downstream analysis.
  • Cross-database biological ID mapping and evidence tables across multiple resources.

Do Not Use This Skill For

  • Single-cell RNA-seq analysis, clustering, UMAP, marker genes, cell annotation, AnnData/h5ad container editing, or scVI/scANVI batch-correction planning. Use scanpy.
  • Bulk RNA-seq differential expression. Use pydeseq2.
  • BAM, SAM, CRAM, VCF, pileup, coverage, or region extraction as a primary file-processing task.
  • deepTools signal-track processing and heatmaps.
  • Protein language models, embeddings, inverse folding, or protein-design workflows.
  • Constraint-based metabolic modeling, FBA, or metabolic-engineering simulation.
  • BED/genomic interval embeddings, genomic-region ML, or gene regulatory network inference.
  • FCS or flow-cytometry file parsing.

Workflow

  1. Identify the biological entity type: gene, transcript, variant, pathway, target, protein structure, protein interaction, trait association, or reference cell population.
  2. Pick the narrowest source that answers the evidence question.
  3. Preserve source names, query terms, access dates, identifiers, and API caveats in the result.
  4. Return evidence in a table when comparing multiple sources.
  5. State when authentication, license, rate limits, or non-public access restricts a source.

Read the full file on GitHub · 44 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 13d ago First seen · 44 lines · 101 tokens per session scan A b7651c5be518

Subscribe to this mod's changes

bio-database-evidence is a skill published in the GitHub repository foryourhealth111-pixel/Vibe-Skills (3,262 stars, last pushed 12d ago), licensed Apache-2.0. It adds 101 tokens to every session and 640 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

data-scientist

Data science across machine learning, statistical modeling, and experimentation. Use when selecting ML algorithms, engineering features, designing A/B tests, evaluating model performance, or building predictive pipelines.

borghei/Claude-Skills · 40 tokens

statistical-analyst

Applied statistics for business and product questions — test selection, assumption checks, power planning, effect sizes with intervals, multiplicity correction. Use when interpreting an experiment, sizing a study, or vetting a claim.

borghei/Claude-Skills · 48 tokens

jupyter-live-kernel

Use a live Jupyter kernel for stateful, iterative Python execution via hamelnb. Load this skill when the task involves exploration, iteration, or inspecting intermediate results — data science, ML experimentation, API exploration, or building up complex code step-by-step. Uses terminal to run CLI commands against a…

braxtonROSE4/zorro-agent · 76 tokens

neuroskill-bci

Connect to a running NeuroSkill instance and incorporate the user's real-time cognitive and emotional state (focus, relaxation, mood, cognitive load, drowsiness, heart rate, HRV, sleep staging, and 40+ derived EXG scores) into responses. Requires a BCI wearable (Muse 2/S or OpenBCI) and the NeuroSkill desktop app…

braxtonROSE4/zorro-agent · 82 tokens

sparse-autoencoder-training

Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.

braxtonROSE4/zorro-agent · 58 tokens

research-paper-writing

End-to-end pipeline for writing ML/AI research papers — from experiment design through analysis, drafting, revision, and submission. Covers NeurIPS, ICML, ICLR, ACL, AAAI, COLM. Integrates automated experiment monitoring, statistical analysis, iterative writing, and citation verification.

braxtonROSE4/zorro-agent · 64 tokens