Vibe-Skills is a collection and routing system that helps AI agents discover, select, and coordinate specialized skills for completing tasks. It is intended for agents that need to organize workflows across many installed capabilities. The catalogue entries are skills and an agent belonging to this system.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add foryourhealth111-pixel/Vibe-Skills --skill biopythongit clone --depth 1 https://github.com/foryourhealth111-pixel/Vibe-SkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/biopython)<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/biopython"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/biopython/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/biopython"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/biopython.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00081 | $0.03427 |
| Opus 5 | $0.00041 | $0.01714 |
| Sonnet 5 | $0.00016 | $0.00685 |
| Haiku 4.5 | $0.00008 | $0.00343 |
Grade A, and why
biopython scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
92% identical to biopython — 13 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 440 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Biopython: Computational Molecular Biology in Python
Overview
Biopython is a comprehensive set of freely available Python tools for biological computation. It provides functionality for sequence manipulation, file I/O, database access, structural bioinformatics, phylogenetics, and many other bioinformatics tasks. The current version is Biopython 1.85 (released January 2025), which supports Python 3 and requires NumPy.
When to Use This Skill
Use this skill when:
- Working with biological sequences (DNA, RNA, or protein)
- Reading, writing, or converting biological file formats (FASTA, GenBank, FASTQ, PDB, mmCIF, etc.)
- Accessing NCBI databases (GenBank, PubMed, Protein, Gene, etc.) via Entrez
- Running BLAST searches or parsing BLAST results
- Performing sequence alignments (pairwise or multiple sequence alignments)
- Analyzing protein structures from PDB files
- Creating, manipulating, or visualizing phylogenetic trees
- Finding sequence motifs or analyzing motif patterns
- Calculating sequence statistics (GC content, molecular weight, melting temperature, etc.)
- Performing structural bioinformatics tasks
- Working with population genetics data
- Any other computational molecular biology task
Do not use this skill as a catch-all for single-cell analysis, bulk RNA-seq differential expression, biological database evidence tables, protein language model training, metabolic flux modeling, or flow-cytometry file parsing. Those surfaces are either owned by another retained bio-science skill or intentionally no longer exposed as separate bundled route owners.
Core Capabilities
Biopython is organized into modular sub-packages, each addressing specific bioinformatics domains:
- Sequence Handling - Bio.Seq and Bio.SeqIO for sequence manipulation and file I/O
- Alignment Analysis - Bio.Align and Bio.AlignIO for pairwise and multiple sequence alignments
- Database Access - Bio.Entrez for programmatic access to NCBI databases
- BLAST Operations - Bio.Blast for running and parsing BLAST searches
- Structural Bioinformatics - Bio.PDB for working with 3D protein structures
- Phylogenetics - Bio.Phylo for phylogenetic tree manipulation and visualization
- Advanced Features - Motifs, population genetics, sequence utilities, and more
What ships with it
7 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 11d ago First seen · 440 lines · 81 tokens per session scan A b0ee0eb8b344
biopython is a skill published in the GitHub repository foryourhealth111-pixel/Vibe-Skills (3,235 stars, last pushed 10d ago), licensed Apache-2.0. It adds 81 tokens to every session and 3,427 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. It is 92% identical to biopython, differing in 13 lines, and is treated as a copy.
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