Vibe-Skills is a collection and routing system that helps AI agents discover, select, and coordinate specialized skills for completing tasks. It is intended for agents that need to organize workflows across many installed capabilities. The catalogue entries are skills and an agent belonging to this system.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add foryourhealth111-pixel/Vibe-Skills --skill matchmsgit clone --depth 1 https://github.com/foryourhealth111-pixel/Vibe-SkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/matchms)<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/matchms"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/matchms/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/foryourhealth111-pixel/vibe-skills/matchms"><img src="https://agentmods.dev/badge/skills/foryourhealth111-pixel/vibe-skills/matchms.svg" alt="Reviewed on agentmods" width="80" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00062 | $0.01645 |
| Opus 5 | $0.00031 | $0.00822 |
| Sonnet 5 | $0.00012 | $0.00329 |
| Haiku 4.5 | $0.00006 | $0.00164 |
Grade A, and why
matchms scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
83% identical to matchms — 8 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 205 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Matchms
Routing Boundary
Use this skill only for matchms, mass spectra, MS/MS spectrum processing, spectral similarity, and metabolomics spectrum workflows. Do not use it for PubMed searches, generic chemistry, non-spectral metabolomics, plotting-only requests, or literature review tasks that do not process mass spectra.
Overview
Matchms is an open-source Python library for mass spectrometry data processing and analysis. Import spectra from various formats, standardize metadata, filter peaks, calculate spectral similarities, and build reproducible analytical workflows.
Core Capabilities
1. Importing and Exporting Mass Spectrometry Data
Load spectra from multiple file formats and export processed data:
from matchms.importing import load_from_mgf, load_from_mzml, load_from_msp, load_from_json
from matchms.exporting import save_as_mgf, save_as_msp, save_as_json
# Import spectra
spectra = list(load_from_mgf("spectra.mgf"))
spectra = list(load_from_mzml("data.mzML"))
spectra = list(load_from_msp("library.msp"))
# Export processed spectra
save_as_mgf(spectra, "output.mgf")
save_as_json(spectra, "output.json")
Supported formats:
- mzML and mzXML (raw mass spectrometry formats)
- MGF (Mascot Generic Format)
- MSP (spectral library format)
- JSON (GNPS-compatible)
- metabolomics-USI references
- Pickle (Python serialization)
For detailed importing/exporting documentation, consult references/importing_exporting.md.
2. Spectrum Filtering and Processing
Apply comprehensive filters to standardize metadata and refine peak data:
from matchms.filtering import default_filters, normalize_intensities
from matchms.filtering import select_by_relative_intensity, require_minimum_number_of_peaks
# Apply default metadata harmonization filters
spectrum = default_filters(spectrum)
# Normalize peak intensities
spectrum = normalize_intensities(spectrum)
# Filter peaks by relative intensity
spectrum = select_by_relative_intensity(spectrum, intensity_from=0.01, intensity_to=1.0)
# Require minimum peaks
spectrum = require_minimum_number_of_peaks(spectrum, n_required=5)
What ships with it
4 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 9d ago First seen · 205 lines · 62 tokens per session scan A 0bc5320fb18f
matchms is a skill published in the GitHub repository foryourhealth111-pixel/Vibe-Skills (3,252 stars, last pushed 12d ago), licensed Apache-2.0. It adds 62 tokens to every session and 1,645 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. It is 83% identical to matchms, differing in 8 lines, and is treated as a copy.
Other skills, from other repositories
jupyter-live-kernel
Use a live Jupyter kernel for stateful, iterative Python execution via hamelnb. Load this skill when the task involves exploration, iteration, or inspecting intermediate results — data science, ML experimentation, API exploration, or building up complex code step-by-step. Uses terminal to run CLI commands against a…
sparse-autoencoder-training
Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.
pytorch-fsdp
Expert guidance for Fully Sharded Data Parallel training with PyTorch FSDP - parameter sharding, mixed precision, CPU offloading, FSDP2.
torch-geometric
PyTorch Geometric (PyG) for graph neural networks — node/link/graph classification, message passing (GCN, GAT, GraphSAGE, GIN), heterogeneous graphs, neighbor sampling, and custom datasets. Use when working with torchgeometric, not for general NetworkX analytics or non-graph PyTorch models.
bids
Use this skill when working with Brain Imaging Data Structure (BIDS) datasets: organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars…
bulk-rnaseq
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathway-enrichment), and…