simplify-code
121Skill Claude CodeCodex
Parallel 3-agent cleanup of recent code changes.
Autonomous research Agent for bioinformatics: 300+ bioinformatics skills, persistent R/Python kernels, autonomous accumulation of user experience, scripts as skills, audit and debate dual gating, self-healing supervision for long tasks, and three-layer long-term memory; autonomously builds knowledge bases, searches and extracts literature, designs research ideas, polishes papers, performs bioinformatics analysis and visualization, and more. Ready to use on Windows/Linux with any OpenAI-compatibl
This repository also configures its own agents. See what MemOmics-Agent tells them →
Skill Claude CodeCodex
Parallel 3-agent cleanup of recent code changes.
Skill Claude CodeCodex
Throwaway experiments to validate an idea before build.
Skill Claude CodeCodex needs its repo
4-phase root cause debugging: understand bugs before fixing.
Skill Claude CodeCodex
TDD: enforce RED-GREEN-REFACTOR, tests before code.
Skill Claude CodeCodex
Yuanbao (元宝) groups: @mention users, query info/members.
Skill Claude CodeCodex
Drive the macOS desktop in the background — screenshots, mouse, keyboard, scroll, drag — without stealing the user's cursor, keyboard focus, or Space. Works with any tool-capable model. Load this skill whenever the computeruse tool is available.
Skill Codex needs its repo
Academic-grade scientific figure creation for Nature/Cell/Science journals. Use when the user asks to create, polish, review, or export scientific figures for manuscript submission. DO NOT trigger for: interactive dashboards (Plotly/Bokeh/Altair), exploratory data analysis without publication intent, math function…
Skill Claude Code
Multi-perspective academic paper review with dynamic reviewer personas. Simulates 5 independent reviewers (Journal-Fit Reviewer + 3 peer reviewers + Devil's Advocate) with field-specific expertise. Supports full review, re-review (verification), quick assessment, methodology focus, Socratic guided, and calibration…
Skill Claude Code
A multi-reviewer workflow for evaluating academic papers from several independent viewpoints. It combines journal fit, research methods, field knowledge, broader relevance, and deliberate challenges to the paper's arguments.
Skill Claude Code
A research-planning tool for designing experiments, reviewing scientific literature, and turning a biological question into a testable study plan. It covers hypotheses, expected observations, methods, evidence, and analysis choices.
Skill Claude Code
A set of rules and tools for running multi-step computational biology analyses in a controlled way. It requires each step to be researched, checked, executed, reviewed, and recorded before moving on.
Skill Claude Code
Initiate an advanced web search by launching a specialized agent to collect relevant information and citations through multiple rounds of web searches for a given query.
Skill Claude CodeCodex
A set of safeguards for coding agents working on long repair or execution tasks. It checks whether the agent actually used tools, whether expected files exist, and whether background work is still running.
Skill Claude Code
Align short sequences (primers) to a longer sequence, allowing for one mismatch. Checks both forward and reverse complement strands.
Skill Claude Code
Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; AlphaFold2 Jumper et al. 2021). Reach for this skill.
Skill Claude Code
Generate comprehensive analysis summary reports.
Skill Claude Code
Extracts P1 amplitude and latency from Auditory Brainstem Response (ABR) waveform data.
Skill Claude Code
Analyzes the stability of pharmaceutical formulations under accelerated storage conditions.
Skill Claude Code
Analyze aortic diameter and geometry from cardiovascular imaging data to measure aortic root diameter, ascending aorta diameter, and calculate geometric parameters such as tortuosity and dilation indi.
Skill Claude Code
Analyze luminescence-based ATP assay data to determine intracellular ATP concentration.
Skill Claude Code
Analyzes bacterial growth curve data to determine growth parameters such as doubling time, growth rate, and lag phase.
Skill Claude Code
Analyze bone microarchitecture parameters from 3D micro-CT images to calculate bone mineral density, bone volume, trabecular number, thickness, and separation.
Skill Claude Code
Analyzes and categorizes mutations induced by Cas9 at target sites.
Skill Claude Code
Analyze flow cytometry data to quantify senescent and apoptotic cell populations.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: