Skill Claude Code
Calculate similarity metrics between two medical images. Supports mutual information, mean squared error, correlation, and normalized cross correlation.
not rated 19 2d ago A 27 tokens
original MIT
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261Mods indexed here, across every type
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Skill Claude Code
A single-cell analysis workflow for studying communication between cells using their gene-expression profiles.
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original MIT
Skill Claude CodeCodex
A batch-processing workflow for running CellBender across multiple single-cell RNA sequencing samples. CellBender is software that removes background RNA contamination.
not rated 19
changed 2d ago C 69 tokens
original MIT
Skill Claude Code
A single-cell RNA sequencing cleanup tool that removes background RNA from raw 10x Genomics data. Background RNA can come from broken cells and empty droplets.
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original MIT
cellchat-v2
197Skill Claude Code
A single-cell analysis workflow for studying communication between cell types by examining signals sent and received between them.
not rated 19 2d ago A SkillSpector: pass 65 tokens
original MIT
chai1
198Skill Claude Code
Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab). Reach for this skill to predict.
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original MIT
Skill Claude Code
Analyze safety of a drug combination for potential interactions using DDInter database with comprehensive risk assessment and clinical recommendations.
not rated 19 2d ago A 29 tokens
original MIT
Skill Claude Code
Check for FDA drug recalls and enforcement actions from the OpenFDA database to identify safety concerns and regulatory actions.
not rated 19 2d ago A 29 tokens
original MIT
Skill Claude Code
A guided workflow for comparing DNA-binding peak data between conditions. ChIP-seq is a method that maps where proteins attach to DNA.
not rated 19 2d ago A 6 tokens
copy · 92% MIT
Skill Claude Code
A guided workflow for finding where DNA-binding signals are concentrated near genes. ChIP-seq is a method that maps where proteins attach to DNA.
not rated 19 2d ago A 7 tokens
copy · 92% MIT
Skill Claude Code
A guided workflow for identifying genes linked to DNA-binding regions. ChIP-seq is a method that maps where proteins attach to DNA.
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original MIT
Skill Claude Code
A guided workflow for analysing clinical-trial data within a biological data-analysis system. It requires each analysis step to be checked, run separately, and reviewed.
not rated 19 2d ago A 5 tokens
copy · 95% MIT
Skill Claude Code
A template for producing several scientific charts from single-cell data, including cell maps, gene-expression summaries, distributions, heatmaps, and flow diagrams. It is aimed at presenting results for publication.
not rated 19 2d ago A SkillSpector: pass 32 tokens
original MIT
code-writer
206Skill Claude Code
A coding aid for writing Python and R scripts, data-analysis code, reusable functions, and other programs. It also describes checking requirements, running the code, and reviewing results.
not rated 19 2d ago A 21 tokens
original MIT
Skill Claude Code
A guided workflow for building gene co-expression networks, which show genes whose activity changes together. It requires research, step-by-step execution, and review of analysis choices.
not rated 19 2d ago A 3 tokens
copy · 88% MIT
Skill Claude Code
Compares two protein structures to identify structural differences and conformational changes.
not rated 19 2d ago A 20 tokens
original MIT
Skill Claude Code
A research workflow for comparing the abilities and internal designs of scientific AI agents. It uses source code, papers, and documented capabilities as evidence.
not rated 19
changed 2d ago C 101 tokens
original MIT
Skill Claude Code
A workflow for correcting batch effects when combining multiple single-cell RNA sequencing samples. Batch effects are unwanted differences caused by processing samples separately rather than by real biology; Harmony is a method for reducing them in the R/Seurat ecosystem.
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original MIT
Skill Claude Code
Create visualization plots for registration results. Generates comparison plots, difference images, overlays, and metric charts.
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original MIT
Skill Claude Code
Create scVI and scANVI embeddings for single-cell RNA-seq data, saving the results to an AnnData object.
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original MIT
Skill Claude Code
Create and save visualization of segmentation results using nilearn. Generates overlay plots and multiple anatomical views.
not rated 19 2d ago A 25 tokens
original MIT
Skill Claude CodeCodex
Cross-species gene regulatory element conservation assessment (CRCA) framework. Five-layer evaluation: R1 sequence conservation → R2 CRE chromatin accessibility (ATAC-driven) → R3 TF binding dynamics (ATAC-driven footprinting) → R4 TF→target regulatory network conservation (SCENIC + pseudobulk + mixed model) → R5…
not rated 19 2d ago A SkillSpector: warn 142 tokens
original MIT
Skill Claude Code
A set of rules for carrying out scientific data analysis in small, checked stages. It requires looking up relevant methods, checking the environment, writing and running code step by step, and reviewing uncertain choices.
not rated 19 2d ago A SkillSpector: pass 6 tokens
original MIT
data-viz
216Skill Claude Code
A plotting workflow for making charts such as UMAP, t-SNE, heat maps, volcano plots, and violin plots from scientific data. It writes Python or R plotting code and checks labels, clarity, and colours.
not rated 19 2d ago A 33 tokens
original MIT
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