scientific-research

scientific-research is a skill for Claude Code, Codex from JunMystery/Agent-Guidance-Python. It costs 29 tokens per session (279 once invoked), scanned A, original, MIT.

A research workflow for searching scientific sources such as PubMed, the United States patent database, and academic literature, including bioinformatics package workflows. PubMed is a large database of biomedical research papers.

In plain words
What is it for?
Use it for PubMed and patent queries, bioinformatics searches with gget, structured literature reviews, and assessments of researchers or papers.
Why use it?
It organizes searches, literature reviews, and evaluations of academic work across scientific sources.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/junmystery/agent-guidance-python/scientific-research
Any agent
npx skills add JunMystery/Agent-Guidance-Python --skill scientific-research
Clone the repo
git clone --depth 1 https://github.com/JunMystery/Agent-Guidance-Python

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for scientific-research

README.md
[![agentmods](https://agentmods.dev/badge/skills/junmystery/agent-guidance-python/scientific-research.svg)](https://agentmods.dev/skills/junmystery/agent-guidance-python/scientific-research)
Your own site
<a href="https://agentmods.dev/skills/junmystery/agent-guidance-python/scientific-research"><img src="https://agentmods.dev/badge/skills/junmystery/agent-guidance-python/scientific-research.svg" alt="Measured on agentmods" height="20"></a>
Per session 29 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 279 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00029 $0.00279
Opus 5 $0.00015 $0.00139
Sonnet 5 $0.00006 $0.00056
Haiku 4.5 $0.00003 $0.00028

Measured 2d ago against content hash 444b6e80be9a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-05, from the pricing page.

Security

Grade A, and why

scientific-research scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/scientific-research/SKILL.md · 24 lines

What it actually says

Scientific Research

Use this skill for queries to external scientific databases (PubMed, USPTO), running bioinformatics queries via the gget package, writing structured literature reviews, and conducting academic scholar evaluations.

References

Databases & Packages

Thinking & Evaluations

Compatibility

Old skill identifiers remain as compatibility shims for one release cycle. Prefer this canonical skill for new routing.

Files

What ships with it

5 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 2d ago First seen · 24 lines · 29 tokens per session scan A 444b6e80be9a

Subscribe to this mod's changes

scientific-research is a skill published in the GitHub repository JunMystery/Agent-Guidance-Python (2 stars, last pushed 1mo ago), licensed MIT. It adds 29 tokens to every session and 279 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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