Scientific Agent Skills is a collection of reusable procedures that give AI agents capabilities for scientific research across areas such as biology, chemistry, medicine, and drug discovery. It is used by researchers and by people building AI scientist workflows with compatible coding agents. The catalogue contains many of the project's skills and supporting instructions.
Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add K-Dense-AI/scientific-agent-skills --skill vaexgit clone --depth 1 https://github.com/K-Dense-AI/scientific-agent-skillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/vaex)<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/vaex"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/vaex/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/k-dense-ai/scientific-agent-skills/vaex"><img src="https://agentmods.dev/badge/skills/k-dense-ai/scientific-agent-skills/vaex.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- Socket pass
- Snyk warn
- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00100 | $0.02164 |
| Opus 5 | $0.00050 | $0.01082 |
| Sonnet 5 | $0.00020 | $0.00433 |
| Haiku 4.5 | $0.00010 | $0.00216 |
Grade A, and why
vaex scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
8 near-identical copies found in the catalogue:
How it starts
The opening of the file, as written. The whole thing — 221 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Vaex
Overview
Vaex is a high-performance Python library designed for lazy, out-of-core DataFrames to process and visualize tabular datasets that are too large to fit into RAM. Vaex can process over a billion rows per second, enabling interactive data exploration and analysis on datasets with billions of rows.
Installation
Install the full meta-package (recommended):
uv pip install vaex
Minimal install (pick only what you need):
uv pip install vaex-core vaex-viz vaex-hdf5 vaex-ml
The vaex package is a meta-package that pulls in vaex-core, vaex-viz, vaex-hdf5, vaex-ml, and other sub-packages. Arrow support is built into vaex-core (the separate vaex-arrow package is deprecated). vaex-distributed is deprecated in favor of vaex-enterprise.
Version notes (vaex 4.19.0+): Python 3.12 and NumPy v2 require vaex >= 4.19.0. On Windows, you may need Python dev headers to build the annoy dependency.
When to Use This Skill
Use Vaex when:
- Processing tabular datasets larger than available RAM (gigabytes to terabytes)
- Performing fast statistical aggregations on massive datasets
- Creating visualizations and heatmaps of large datasets
- Building machine learning pipelines on big data
- Converting between data formats (CSV, HDF5, Arrow, Parquet)
- Needing lazy evaluation and virtual columns to avoid memory overhead
- Working with astronomical data, financial time series, or other large-scale scientific datasets
Vaex vs alternatives: Use polars when data fits in RAM and you need maximum in-memory speed. Use dask when you need distributed pandas/NumPy across a cluster. Use vaex for single-machine, out-of-core analytics on tabular data that exceeds RAM via memory-mapped HDF5/Arrow files.
Core Capabilities
Vaex provides six primary capability areas, each documented in detail in the references directory:
1. DataFrames and Data Loading
Load and create Vaex DataFrames from various sources including files (HDF5, CSV, Arrow, Parquet), pandas DataFrames, NumPy arrays, and dictionaries. Reference references/core_dataframes.md for:
- Opening large files efficiently
- Converting from pandas/NumPy/Arrow
- Working with example datasets
- Understanding DataFrame structure
What ships with it
6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 8d ago First seen · 221 lines · 100 tokens per session scan A f9cb1c71dd2d
vaex is a skill published in the GitHub repository K-Dense-AI/scientific-agent-skills (44,220 stars, last pushed 4d ago), licensed MIT. It adds 100 tokens to every session and 2,164 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
Other skills, from other repositories
AI & LLM Security
LLM and AI application security testing — prompt injection, jailbreak resistance, OWASP LLM Top 10 (2025), RAG and agent/tool-use security, model supply chain, and AI red teaming for authorized assessments.
laravel-ai-sdk
Use when integrating AI agents, tool calling, embeddings, structured output, or streaming in Laravel 13 via the laravel/ai package.
laravel-vector-search
Use when implementing semantic/vector search in Laravel 13 with PostgreSQL + pgvector.
prompt-creation
Use when writing a new system prompt from scratch, structuring it with Anthropic's 9-element format, or choosing emphasis levels and few-shot examples.
prompt-library
Use when looking for a ready-made agent or task template (code review, support, data analysis, translation, extraction) instead of writing one from scratch.
prompt-testing
Use when comparing two prompt variants, defining quality/efficiency/robustness metrics, or deciding whether to adopt a challenger prompt over a baseline.