Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add learningmatter-mit/AtomisticSkills --skill mat-grand-canonical-mcgit clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/learningmatter-mit/atomisticskills/mat-grand-canonical-mc)<a href="https://agentmods.dev/skills/learningmatter-mit/atomisticskills/mat-grand-canonical-mc"><img src="https://agentmods.dev/badge/skills/learningmatter-mit/atomisticskills/mat-grand-canonical-mc/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/learningmatter-mit/atomisticskills/mat-grand-canonical-mc"><img src="https://agentmods.dev/badge/skills/learningmatter-mit/atomisticskills/mat-grand-canonical-mc.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector warn
SkillSpector: 1 finding, up to medium
These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →
- medium analysis-evasion · line 1 Suspicious Unicode normalization or mixed-script contentFix: Review the flagged content for security risks. Ensure no credentials, secrets, or sensitive data are exposed.
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00034 | $0.01768 |
| Opus 5 | $0.00017 | $0.00884 |
| Sonnet 5 | $0.00007 | $0.00354 |
| Haiku 4.5 | $0.00003 | $0.00177 |
Grade A, and why
mat-grand-canonical-mc scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 5d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 167 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Grand Canonical Monte Carlo
Goal
To perform Grand Canonical Monte Carlo (GCMC) simulations using cluster expansion models to study composition-dependent thermodynamics and generate temperature-composition (T-x) phase diagrams. GCMC allows the system composition to vary by controlling the chemical potential ($\mu$) instead of fixing composition directly.
Background
In the canonical ensemble (fixed N, V, T), Monte Carlo simulations explore configurational space at a fixed composition. In contrast, the grand canonical (or semigrand canonical) ensemble allows composition to fluctuate in response to specified chemical potentials. This is particularly useful for:
- Mapping phase diagrams (composition vs. temperature)
- Identifying miscibility gaps and phase transitions
- Studying composition-dependent thermodynamics
- Exploring equilibrium compositions at different chemical potentials
For binary alloys (e.g., Cu-Ag), we typically control the chemical potential difference Δμ = μ_A - μ_B by setting one species to μ = 0 and varying the other.
Workflow
Step 1: Load a Trained Cluster Expansion
Start with a trained cluster expansion model. You can train one using the ml-cluster-expansion skill or use an existing model.
# Load the cluster expansion
from smol.cofe import ClusterExpansion
ce = ClusterExpansion.load("path/to/cluster_expansion.json")
print(f"Loaded CE with {len(ce.cluster_subspace)} clusters")
Step 2: Run Chemical Potential Sweep
Use the run_gcmc_sweep.py script to perform systematic sweeps of chemical potential at different temperatures.
# Env: smol-agent
python .agents/skills/mat-grand-canonical-mc/scripts/run_gcmc_sweep.py \
--ce_file cluster_expansion.json \
--supercell 3 3 3 \
--temperatures 400 600 800 1000 \
--mu_min -0.4 \
--mu_max 0.4 \
--num_mu_points 20 \
--steps 50000 \
--equilibration_steps 10000 \
--element Ag \
--output_dir gcmc_results/
What ships with it
7 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 5d ago First seen · 167 lines · 34 tokens per session scan A 48fa28525441
mat-grand-canonical-mc is a skill published in the GitHub repository learningmatter-mit/AtomisticSkills (162 stars, last pushed 5d ago), licensed MIT. It adds 34 tokens to every session and 1,768 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
Other skills, from other repositories
cd-calculator
Python calculators for geometry analysis, structural checking, solar calculations, panel optimization, mesh analysis, material estimation, and fabrication cost estimation for AEC computational design.
cd-calculator
Python calculators for geometry analysis, structural checking, solar calculations, panel optimization, mesh analysis, material estimation, and fabrication cost estimation for AEC computational design.
instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…
exploratory-data-analysis
Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…
matlab
Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.
phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.