r-nlp-topic

r-nlp-topic is a skill for Claude Code, Codex from LeoLin990405/r-analytics-skill. It costs 30 tokens per session (665 once invoked), scanned A, original, MIT.

An R skill for discovering themes in document collections with topic models such as LDA and CTM, plus interactive topic visualization.

In plain words
What is it for?
Use it to prepare document-term data, fit models, compare topic counts, extract topic probabilities, and create LDAvis views.
Why use it?
It provides a workflow for finding, inspecting, and presenting themes in large amounts of text.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Good fit Use it to prepare document-term data, fit models, compare topic counts, extract topic probabilities, and create LDAvis views.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/leolin990405/r-analytics-skill/r-nlp-topic
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add LeoLin990405/r-analytics-skill --skill r-nlp-topic
Clone the repo
git clone --depth 1 https://github.com/LeoLin990405/r-analytics-skill

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for r-nlp-topic

README.md
[![agentmods](https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/r-nlp-topic/github.svg)](https://agentmods.dev/skills/leolin990405/r-analytics-skill/r-nlp-topic)
Your own site
<a href="https://agentmods.dev/skills/leolin990405/r-analytics-skill/r-nlp-topic"><img src="https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/r-nlp-topic/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for r-nlp-topic

Your own site · 80×15
<a href="https://agentmods.dev/skills/leolin990405/r-analytics-skill/r-nlp-topic"><img src="https://agentmods.dev/badge/skills/leolin990405/r-analytics-skill/r-nlp-topic.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 30 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 665 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00030 $0.00665
Opus 5 $0.00015 $0.00332
Sonnet 5 $0.00006 $0.00133
Haiku 4.5 $0.00003 $0.00067

Measured 9d ago against content hash 83f8ae992a7b, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

r-nlp-topic scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

sub-skills/r-nlp/r-nlp-topic/SKILL.md · 113 lines

How it starts

The opening of the file, as written. The whole thing — 113 lines — stays where its author put it; the contents beside it link to each section on GitHub.

R Topic Modeling

Latent topic discovery.

topicmodels (LDA)

library(topicmodels)

# Prepare DTM
dtm <- cast_dtm(df, document, word, n)

# Fit LDA
lda <- LDA(dtm, k = 10, control = list(seed = 1234))

# Topics
topics(lda)  # Top topic per document
terms(lda, 10)  # Top 10 terms per topic

# Tidy output
library(tidytext)
topics_beta <- tidy(lda, matrix = "beta")  # Word-topic probabilities
topics_gamma <- tidy(lda, matrix = "gamma")  # Document-topic probabilities

# Top terms per topic
topics_beta %>%
  group_by(topic) %>%
  slice_max(beta, n = 10) %>%
  ungroup()

# Find optimal k
library(ldatuning)
result <- FindTopicsNumber(
  dtm,
  topics = seq(2, 20, by = 2),
  metrics = c("Griffiths2004", "CaoJuan2009", "Arun2010", "Deveaud2014"),
  method = "Gibbs",
  control = list(seed = 1234)
)
FindTopicsNumber_plot(result)

LDAvis (Visualization)

library(LDAvis)

# Prepare data for visualization
phi <- posterior(lda)$terms
theta <- posterior(lda)$topics
vocab <- colnames(phi)
doc_length <- rowSums(as.matrix(dtm))
term_freq <- colSums(as.matrix(dtm))

json <- createJSON(
  phi = phi,
  theta = theta,
  vocab = vocab,
  doc.length = doc_length,
  term.frequency = term_freq
)

serVis(json)

stm (Structural Topic Model)

library(stm)

# Prepare data
processed <- textProcessor(texts, metadata = df)
out <- prepDocuments(processed$documents, processed$vocab, processed$meta)

# Fit STM with covariates
model <- stm(
  documents = out$documents,
  vocab = out$vocab,
  K = 10,
  prevalence = ~ category + s(date),
  data = out$meta
)

# Results
labelTopics(model)
plot(model, type = "summary")

# Topic correlations
topicCorr(model)

# Effect of covariates
effect <- estimateEffect(1:10 ~ category, model, meta = out$meta)
plot(effect, covariate = "category", topics = 1:5)

# Find optimal K
search_k <- searchK(out$documents, out$vocab, K = c(5, 10, 15, 20))
plot(search_k)

CTM (Correlated Topic Model)

library(topicmodels)

ctm <- CTM(dtm, k = 10, control = list(seed = 1234))
terms(ctm, 10)

Read the full file on GitHub · 113 lines

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 113 lines · 30 tokens per session scan A 83f8ae992a7b

Subscribe to this mod's changes

r-nlp-topic is a skill published in the GitHub repository LeoLin990405/r-analytics-skill (5 stars, last pushed 6mo ago), licensed MIT. It adds 30 tokens to every session and 665 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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