clinical-reports

clinical-reports is a skill for Claude Code from Lord1Egypt/scientific-agent-toolkit. It costs 71 tokens per session (8,532 once invoked), scanned A, a copy of clinical-reports, MIT.

A guide for writing medical documents, including case reports, diagnostic reports, clinical trial reports, and patient notes. It covers formats such as SOAP notes and discharge summaries, which are standard ways to record patient care.

In plain words
What is it for?
Use it to draft or structure healthcare documentation, research case reports, diagnostic findings, clinical-trial records, and regulatory study reports.
Why use it?
It helps keep clinical writing accurate, complete, objective, and aligned with medical and regulatory requirements. It also emphasizes patient privacy and reliable data.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Good fit Use it to draft or structure healthcare documentation, research case reports, diagnostic findings, clinical-trial records, and regulatory study reports.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/lord1egypt/scientific-agent-toolkit/clinical-reports
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Lord1Egypt/scientific-agent-toolkit --skill clinical-reports
Clone the repo
git clone --depth 1 https://github.com/Lord1Egypt/scientific-agent-toolkit

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for clinical-reports

README.md
[![agentmods](https://agentmods.dev/badge/skills/lord1egypt/scientific-agent-toolkit/clinical-reports/github.svg)](https://agentmods.dev/skills/lord1egypt/scientific-agent-toolkit/clinical-reports)
Your own site
<a href="https://agentmods.dev/skills/lord1egypt/scientific-agent-toolkit/clinical-reports"><img src="https://agentmods.dev/badge/skills/lord1egypt/scientific-agent-toolkit/clinical-reports/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for clinical-reports

Your own site · 80×15
<a href="https://agentmods.dev/skills/lord1egypt/scientific-agent-toolkit/clinical-reports"><img src="https://agentmods.dev/badge/skills/lord1egypt/scientific-agent-toolkit/clinical-reports.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 71 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 8,532 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 95% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00071 $0.08532
Opus 5 $0.00036 $0.04266
Sonnet 5 $0.00014 $0.01706
Haiku 4.5 $0.00007 $0.00853

Measured 11d ago against content hash fc1a329b527a, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

clinical-reports scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

The scan reads SKILL.md. This mod also ships 10 executable files (scripts/check_deidentification.py, scripts/compliance_checker.py, scripts/extract_clinical_data.py, …), listed below but not scanned — reading those needs a real analyzer, not pattern matching.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

95% identical to clinical-reports — 11 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

scientific-skills/clinical-reports/SKILL.md · 1,132 lines

How it starts

The opening of the file, as written. The whole thing — 1,132 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Clinical Report Writing

Overview

Clinical report writing is the process of documenting medical information with precision, accuracy, and compliance with regulatory standards. This skill covers four major categories of clinical reports: case reports for journal publication, diagnostic reports for clinical practice, clinical trial reports for regulatory submission, and patient documentation for medical records. Apply this skill for healthcare documentation, research dissemination, and regulatory compliance.

Critical Principle: Clinical reports must be accurate, complete, objective, and compliant with applicable regulations (HIPAA, FDA, ICH-GCP). Patient privacy and data integrity are paramount. All clinical documentation must support evidence-based decision-making and meet professional standards.

When to Use This Skill

This skill should be used when:

  • Writing clinical case reports for journal submission (CARE guidelines)
  • Creating diagnostic reports (radiology, pathology, laboratory)
  • Documenting clinical trial data and adverse events
  • Preparing clinical study reports (CSR) for regulatory submission
  • Writing patient progress notes, SOAP notes, and clinical summaries
  • Drafting discharge summaries, H&P documents, or consultation notes
  • Ensuring HIPAA compliance and proper de-identification
  • Validating clinical documentation for completeness and accuracy
  • Preparing serious adverse event (SAE) reports
  • Creating data safety monitoring board (DSMB) reports

Visual Enhancement with Scientific Schematics

⚠️ MANDATORY: Every clinical report MUST include at least 1 AI-generated figure using the scientific-schematics skill.

This is not optional. Clinical reports benefit greatly from visual elements. Before finalizing any document:

  1. Generate at minimum ONE schematic or diagram (e.g., patient timeline, diagnostic algorithm, or treatment workflow)
  2. For case reports: include clinical progression timeline
  3. For trial reports: include CONSORT flow diagram

Read the full file on GitHub · 1,132 lines

Files

What ships with it

31 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 1,132 lines · 71 tokens per session scan A fc1a329b527a

Subscribe to this mod's changes

clinical-reports is a skill published in the GitHub repository Lord1Egypt/scientific-agent-toolkit (3 stars, last pushed 3mo ago), licensed MIT. It adds 71 tokens to every session and 8,532 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. It is 95% identical to clinical-reports, differing in 11 lines, and is treated as a copy.

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