adaptyv

adaptyv is a skill for Claude Code, Codex from magic3007/dotfiles. It costs 113 tokens per session (2,456 once invoked), scanned A, a copy of adaptyv, MIT.

A guide to using the Adaptyv Bio Foundry, a cloud laboratory that runs protein experiments from submitted amino-acid sequences, through its API and Python tools.

In plain words
What is it for?
Designing and submitting protein binding, thermostability, expression, or fluorescence experiments, then collecting their results.
Why use it?
It explains how to send protein experiments to the lab and retrieve the results without guessing how the service works or exposing API keys in code.

Skill for Claude CodeCodex

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/magic3007/dotfiles/adaptyv
Any agent
npx skills add magic3007/dotfiles --skill adaptyv
Clone the repo
git clone --depth 1 https://github.com/magic3007/dotfiles

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for adaptyv

README.md
[![agentmods](https://agentmods.dev/badge/skills/magic3007/dotfiles/adaptyv.svg)](https://agentmods.dev/skills/magic3007/dotfiles/adaptyv)
Your own site
<a href="https://agentmods.dev/skills/magic3007/dotfiles/adaptyv"><img src="https://agentmods.dev/badge/skills/magic3007/dotfiles/adaptyv.svg" alt="Measured on agentmods" height="20"></a>
Per session 113 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,456 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. Scan, not verified.
Origin 95% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00113 $0.02456
Opus 5 $0.00056 $0.01228
Sonnet 5 $0.00023 $0.00491
Haiku 4.5 $0.00011 $0.00246

Measured 3d ago against content hash 59da5d8329a1, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

adaptyv scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 3d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

The [official API docs](https://docs.adaptyvbio.com/api-reference/api-introduction) use `FOUNDRY_API_TOKEN` in curl examples; that is the same bearer token — prefer `ADAPTYV_API_KEY` in Python and new shell scripts for c
Origin

This is a copy

95% identical to adaptyv — 1 line differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

claude/skills/scientific-agent-skills/skills/adaptyv/SKILL.md · 242 lines

How it starts

The opening of the file, as written. The whole thing — 242 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Adaptyv Bio Foundry API

Adaptyv Bio is a cloud lab that turns protein sequences into experimental data. Users submit amino acid sequences via API or UI; Adaptyv's automated lab runs assays (binding, thermostability, expression, fluorescence) and delivers results in ~21 days.

Official docs: docs.adaptyvbio.com/api-reference · llms.txt index · OpenAPI spec

Quick Start

Base URL: https://foundry-api-public.adaptyvbio.com/api/v1

Authentication: Bearer token in the Authorization header. Tokens are obtained from foundry.adaptyvbio.com sidebar.

When writing code, always read the API key from the environment variable ADAPTYV_API_KEY or from a .env file — never hardcode tokens. Check for a .env file in the project root first; if one exists, use a library like python-dotenv to load it.

The official API docs use FOUNDRY_API_TOKEN in curl examples; that is the same bearer token — prefer ADAPTYV_API_KEY in Python and new shell scripts for consistency with the SDK.

export ADAPTYV_API_KEY="abs0_..."
curl https://foundry-api-public.adaptyvbio.com/api/v1/targets?limit=3 \
  -H "Authorization: Bearer $ADAPTYV_API_KEY"

Every request except GET /openapi.json requires authentication. Store tokens in environment variables or .env files — never commit them to source control.

Python SDK

Version note: adaptyv-sdk 0.1.0 (beta) is not yet on PyPI — install from GitHub:

uv pip install "git+https://github.com/adaptyvbio/adaptyv-sdk.git"

In a project with pyproject.toml:

uv add "adaptyv-sdk @ git+https://github.com/adaptyvbio/adaptyv-sdk.git"

Environment variables (set in shell or .env file):

ADAPTYV_API_KEY=your_api_key
ADAPTYV_API_URL=https://foundry-api-public.adaptyvbio.com/api/v1
ADAPTYV_ORGANIZATION_ID=your_org_id  # optional

Read the full file on GitHub · 242 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 3d ago First seen · 242 lines · 113 tokens per session scan A 59da5d8329a1

Subscribe to this mod's changes

adaptyv is a skill published in the GitHub repository magic3007/dotfiles (11 stars, last pushed today), licensed MIT. It adds 113 tokens to every session and 2,456 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). It is 95% identical to adaptyv, differing in 1 line, and is treated as a copy.

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