review-agent-based-models

review-agent-based-models is a skill for Claude Code from malekokour/clinpharm-pmx-skills. It costs 111 tokens per session (2,293 once invoked), scanned A, original, MIT.

A source-linked review of evidence about agent-based models, computer models that represent individual people, animals, or other entities and their interactions. It records findings, counts, gaps, contradictions, and decisions the evidence cannot support.

In plain words
What is it for?
Use it to review an agent-based-model evidence package, organize sourced findings, identify missing or conflicting evidence, and prepare items for expert disposition.
Why use it?
It provides a consistent way to inspect the supporting material without deciding the clinical or regulatory outcome. It makes the basis for each finding easier to check.

Skill for Claude Code

Written for Claude Code: allowed-tools in frontmatter.

Part of the clinpharm-pmx-skills plugin — 145 skills shipped together

Good fit Use it to review an agent-based-model evidence package, organize sourced findings, identify missing or conflicting evidence, and prepare items for expert disposition.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/malekokour/clinpharm-pmx-skills/review-agent-based-models
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add malekokour/clinpharm-pmx-skills --skill review-agent-based-models
Clone the repo
git clone --depth 1 https://github.com/malekokour/clinpharm-pmx-skills

Made for: Claude Code.

Or install clinpharm-pmx-skills, the plugin that ships this one along with the rest of its 145 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for review-agent-based-models

README.md
[![agentmods](https://agentmods.dev/badge/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models/github.svg)](https://agentmods.dev/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models)
Your own site
<a href="https://agentmods.dev/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models"><img src="https://agentmods.dev/badge/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for review-agent-based-models

Your own site · 80×15
<a href="https://agentmods.dev/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models"><img src="https://agentmods.dev/badge/skills/malekokour/clinpharm-pmx-skills/review-agent-based-models.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 111 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,293 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00111 $0.02293
Opus 5 $0.00056 $0.01146
Sonnet 5 $0.00022 $0.00459
Haiku 4.5 $0.00011 $0.00229

Measured 11d ago against content hash cbf5640258a6, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

review-agent-based-models scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/review-agent-based-models/SKILL.md · 224 lines

How it starts

The opening of the file, as written. The whole thing — 224 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Review Agent Based Models

Agent-based models evidence pack — bounded review / prepare / structure workflow for the L3 task Agent-based models (Band A · Quantitative pharmacology).

Skills review, reconcile, verify, structure and flag. Qualified humans decide, approve, sign off, submit and act.

Four-box contract

Box Content
Trigger Please review the materials for Agent-based models and produce a sourced finding register — do not decide the clinical or regulatory outcome.
Input Primary package for Agent-based models plus the supporting pack in Required inputs
Output Source-linked finding register with denominators; gap / contradiction flags; refuse list
Refuses Decide the outcome of Agent-based models; approve or submit related documents; select or adjust a dose; speak for the sponsor to an agency

Who this is for

Clinical pharmacology or pharmacometrics practitioners working on Quantitative pharmacology who need a repeatable, sourced pass over Agent-based models — not a decision and not a filing.

When to use this skill

  • "Please review the materials for Agent-based models and produce a sourced finding register — do not decide the clinical or regulatory outcome."
  • "What is evidenced, missing, or inconsistent for: Agent-based models?"
  • "Trace every material statement about Agent-based models to a locator."
  • "Prepare the review pack for Agent-based models before a meeting or QC cut."

When NOT to use this skill

Request Why not this skill Where it belongs
Decide clinical significance, dose, or labelling outcome Human decision Qualified clinical pharmacologist / labelling owner
Approve, sign off, or submit Human authority Accountable owner / signatory
A different L3 neighbour sharing vocabulary only Wrong grain or human-owned the neighbour skill named by the router
Decide clinical significance or dose Wrong grain or human-owned qualified clinical pharmacologist
Run or re-fit a model as the primary ask Modelling execution Modelling environment + human modeller

Read the full file on GitHub · 224 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 224 lines · 111 tokens per session scan A cbf5640258a6

Subscribe to this mod's changes

review-agent-based-models is a skill published in the GitHub repository malekokour/clinpharm-pmx-skills (6 stars, last pushed 10d ago), licensed MIT. It adds 111 tokens to every session and 2,293 once invoked, about $0.0006 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Related

Other skills, from other repositories

imaging-data-commons

Query and download public cancer imaging data from NCI Imaging Data Commons. Invoke for any question about IDC collections, cancer imaging datasets, DICOM data access, radiology (CT, MR, PET) or pathology AI training sets, metadata queries, visualization, or license checks — even when the user doesn't explicitly…

K-Dense-AI/scientific-agent-skills · 75 tokens

lab-hardware-cad

Design custom laboratory hardware as parametric build123d models and export fabrication-ready STEP, STL, and DXF files - microfluidic chips and molds, optomechanical mounts and breadboard adapters, cuvette and microplate holders, tube racks, animal-behavior rigs, and 3D-printed instrument fixtures. Use when a research…

K-Dense-AI/scientific-agent-skills · 106 tokens

onekgpd

Query the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals…

K-Dense-AI/scientific-agent-skills · 143 tokens

statistical-analysis

Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze experimental or survey data, check statistical assumptions, compute required…

K-Dense-AI/scientific-agent-skills · 111 tokens

diffdock

DiffDock and DiffDock-L molecular docking. Use for protein-small-molecule pose prediction from PDB or sequence plus SMILES/SDF/MOL2, batch docking, virtual screening, and pose-confidence interpretation. Not for binding affinity prediction.

K-Dense-AI/scientific-agent-skills · 51 tokens

hypothesis-generation

Formulate evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans. Use when turning observations or preliminary findings into transparent, testable research plans without treating…

K-Dense-AI/scientific-agent-skills · 58 tokens