dismech: Skill for Claude Code

.claude/skills/dismech-pr-review/SKILL.md

dismech-pr-review is a skill for Claude Code from monarch-initiative/dismech. It costs 37 tokens per session (5,802 once invoked), scanned A, original, BSD-3-Clause.

A review guide for pull requests in the DisMech disease-mechanism database, especially changes that add or update disorder records.

In plain words
What is it for?
Reviewing or drafting disorder curation changes, checking entries against similar records, and flagging suspicious or out-of-scope pull requests.
Why use it?
It helps reviewers check that biological and clinical information is correct, specific, and matches the database format. It also highlights accidental changes caused by merge conflicts or work outside the request.

Skill for Claude Code

Written for Claude Code: installed under .claude/. Also seen: mentions CLAUDE.md.

This is monarch-initiative/dismech's own configuration. It tells Claude Code how to work on dismech itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything dismech configures →

Reuse

Borrowing it

Nothing to install: this file belongs to monarch-initiative/dismech. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/monarch-initiative/dismech/main/.claude/skills/dismech-pr-review/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/monarch-initiative/dismech

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for dismech-pr-review

README.md
[![agentmods](https://agentmods.dev/badge/skills/monarch-initiative/dismech/dismech-pr-review/github.svg)](https://agentmods.dev/skills/monarch-initiative/dismech/dismech-pr-review)
Your own site
<a href="https://agentmods.dev/skills/monarch-initiative/dismech/dismech-pr-review"><img src="https://agentmods.dev/badge/skills/monarch-initiative/dismech/dismech-pr-review/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for dismech-pr-review

Your own site · 80×15
<a href="https://agentmods.dev/skills/monarch-initiative/dismech/dismech-pr-review"><img src="https://agentmods.dev/badge/skills/monarch-initiative/dismech/dismech-pr-review.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 37 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 5,802 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00037 $0.05802
Opus 5 $0.00018 $0.02901
Sonnet 5 $0.00007 $0.01160
Haiku 4.5 $0.00004 $0.00580

Measured 12d ago against content hash 773e1fe0b89c, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

dismech-pr-review scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

curl -sG "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi" \
.claude/skills/dismech-pr-review/SKILL.md · 425 lines

How it starts

The opening of the file, as written. The whole thing — 425 lines — stays where its author put it; the contents beside it link to each section on GitHub.

PR Review Skill

Use this skill to review or draft curation guidance and to QA disorder entries for correctness, specificity, and schema alignment.

Use all appropriate skills. What follows are some specific guidelines aimed to catch common suboptimal things we see in PRs a lot. This list is not complete and you should always consult skills and comparable entries.

IMPORTANT: check for silent reversions when the PR owner has resolved conflicts

Although your primary objective is to evaluate the biological and clinical content of PRs, you MUST be vigilant for cases where the committed has botched a rebase or merge arising from merge conflict resolution (usually in cache files). You should also try ensure that all changes in the PR are in scope. If files are touched that are not relevant to the original request this is a warning sign.

If in doubt, mark the PR as being review-required, and assign to cmungall.

If the author truly did intend to include changes that seem out of scope, they will label the PR as scope-override.

If you see a massive number of files touched and these are not relevant, this is a sure sign something has gone horribly wrong. Flag the PR assign to cmungall and stop.

Typically conflicts arise from difference in cache files. We don't really care so much how these are resolved as they are derived files. More care should be taken when looking at conflicts resolution in anything authored, whether it is yaml, python, markdown etc.

If the case seems nuanced, consult issue #1430 for further guidance.

Trust the Validation Process

Do NOT second-guess deterministic validation.

The dismech CI pipeline runs just validate-disorders on every PR's changed disorder files, which batches schema, ontology-term, and reference/snippet validation in one pass. If a file passes those checks, it is schema-valid and structurally correct. The reviewer's job is NOT to re-inspect the output of these checks — that is redundant and leads to false positives.

Read the full file on GitHub · 425 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 425 lines · 37 tokens per session scan A 773e1fe0b89c

Subscribe to this mod's changes

dismech-pr-review is a skill published in the GitHub repository monarch-initiative/dismech (61 stars, last pushed today), licensed BSD-3-Clause. It adds 37 tokens to every session and 5,802 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 1 finding (makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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