research-paper-writing

research-paper-writing is a skill for Claude Code, Codex from NousResearch/hermes-agent. It costs 22 tokens per session (16,698 once invoked), scanned C, original, MIT.

A workflow for planning, running, analysing, and writing machine-learning research papers for academic conferences. It also covers revisions after reviews and new experiments.

In plain words
What is it for?
Use it for literature review, experiment design, experiment monitoring, paper drafting, self-review, revision, and submission preparation.
Why use it?
It organises the many connected tasks involved in turning research results into a submitted paper.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions subagents.

Good fit Use it for literature review, experiment design, experiment monitoring, paper drafting, self-review, revision, and submission preparation.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/nousresearch/hermes-agent/research-paper-writing
About the project

Hermes Agent is an AI assistant that learns from its use by creating and improving skills, retaining knowledge, searching past conversations, and adapting to its users. It is for people who want to run an agent through a terminal or messaging platforms while connecting it to different AI models and scheduled tasks.

NousResearch/hermes-agent · 244,603 stars · on GitHub · hermes-agent.nousresearch.com

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add NousResearch/hermes-agent --skill research-paper-writing
Clone the repo
git clone --depth 1 https://github.com/NousResearch/hermes-agent

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for research-paper-writing

README.md
[![agentmods](https://agentmods.dev/badge/skills/nousresearch/hermes-agent/research-paper-writing/github.svg)](https://agentmods.dev/skills/nousresearch/hermes-agent/research-paper-writing)
Your own site
<a href="https://agentmods.dev/skills/nousresearch/hermes-agent/research-paper-writing"><img src="https://agentmods.dev/badge/skills/nousresearch/hermes-agent/research-paper-writing/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for research-paper-writing

Your own site · 80×15
<a href="https://agentmods.dev/skills/nousresearch/hermes-agent/research-paper-writing"><img src="https://agentmods.dev/badge/skills/nousresearch/hermes-agent/research-paper-writing.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 22 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 16,698 The whole file, excluding the scripts and references it only reads on demand.
Security scan C 2 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • Socket pass 29 Apr 2026
  • Snyk warn 29 Apr 2026
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 7 findings, up to high

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • high YARA Match · line 4
    YARA rule matched a hack tool or exploit indicator (offensive tools, reconnaissance, privilege escalation, or exploit frameworks).
    Fix: Remove offensive tool references and exploit code. Legitimate agent skills should not contain penetration testing tools, exploit frameworks, or reconnaissance utilities.
  • high Prompt Injection · line 25
    Hidden instructions were detected in comments or invisible text. These could contain malicious directives. Manual review is recommended.
    Fix: Audit all comments and invisible characters. Remove any instructions that direct the agent to perform unauthorized actions. Use plain, reviewable content.
  • high Prompt Injection · line 45
    Hidden instructions were detected in comments or invisible text. These could contain malicious directives. Manual review is recommended.
    Fix: Audit all comments and invisible characters. Remove any instructions that direct the agent to perform unauthorized actions. Use plain, reviewable content.
  • medium MCP Rug Pull · line 274
    npx commands without a version suffix (e.g. @1.0.0) create a rug-pull risk if the upstream server is compromised and publishes a malicious update.
    Fix: Pin the version: npx @scope/[email protected]
  • medium Rogue Agent · line 479
    Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.
    Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
  • medium Rogue Agent · line 1390
    Skill establishes unauthorized persistence across sessions via cron jobs, startup scripts, or state files. Session persistence allows an attacker to maintain access beyond the current interaction.
    Fix: Remove any persistence mechanisms (cron jobs, startup scripts, state files). Skills should not maintain state across sessions without explicit user consent.
  • medium Data Exfiltration · line 1625
    Data is being sent to an external URL. This could be legitimate telemetry or data exfiltration. Manual review is recommended.
    Fix: Verify the destination URL is trusted and necessary. Remove or replace with documented APIs. Ensure no secrets, tokens, or PII are transmitted.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00022 $0.16698
Opus 5 $0.00011 $0.08349
Sonnet 5 $0.00004 $0.03340
Haiku 4.5 $0.00002 $0.01670

Measured 8d ago against content hash ad6b059c628f, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade C, and why

research-paper-writing scanned grade C with 2 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Hidden instructionshighPrompt injection

Directives inside HTML comments, invisible characters or bidirectional overrides are read by the model and not by the person reviewing the file.

<!-- ascii-guard-ignore -->

Makes network callslowCapability

Not a fault in itself. Listed so you know the mod talks to something, and to what.

response = requests.get(
Origin

Copies of this mod

8 near-identical copies found in the catalogue:

optional-skills/research/research-paper-writing/SKILL.md · 1,628 lines

How it starts

The opening of the file, as written. The whole thing — 1,628 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research Paper Writing Pipeline

End-to-end pipeline for producing publication-ready ML/AI research papers targeting NeurIPS, ICML, ICLR, ACL, AAAI, and COLM. This skill covers the full research lifecycle: experiment design, execution, monitoring, analysis, paper writing, review, revision, and submission.

This is not a linear pipeline — it is an iterative loop. Results trigger new experiments. Reviews trigger new analysis. The agent must handle these feedback loops.

┌─────────────────────────────────────────────────────────────┐
│                    RESEARCH PAPER PIPELINE                  │
│                                                             │
│  Phase 0: Project Setup ──► Phase 1: Literature Review      │
│       │                          │                          │
│       ▼                          ▼                          │
│  Phase 2: Experiment     Phase 5: Paper Drafting ◄──┐      │
│       Design                     │                   │      │
│       │                          ▼                   │      │
│       ▼                    Phase 6: Self-Review      │      │
│  Phase 3: Execution &           & Revision ──────────┘      │
│       Monitoring                 │                          │
│       │                          ▼                          │
│       ▼                    Phase 7: Submission               │
│  Phase 4: Analysis ─────► (feeds back to Phase 2 or 5)     │
│                                                             │
└─────────────────────────────────────────────────────────────┘

When To Use This Skill

Use this skill when:

  • Starting a new research paper from an existing codebase or idea
  • Designing and running experiments to support paper claims
  • Writing or revising any section of a research paper
  • Preparing for submission to a specific conference or workshop
  • Responding to reviews with additional experiments or revisions
  • Converting a paper between conference formats
  • Writing non-empirical papers — theory, survey, benchmark, or position papers (see Paper Types Beyond Empirical ML)
  • Designing human evaluations for NLP, HCI, or alignment research
  • Preparing post-acceptance deliverables — posters, talks, code releases

Read the full file on GitHub · 1,628 lines

Files

What ships with it

55 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 8d ago First seen · 1,628 lines · 22 tokens per session scan C ad6b059c628f

Subscribe to this mod's changes

research-paper-writing is a skill published in the GitHub repository NousResearch/hermes-agent (244,603 stars, last pushed today), licensed MIT. It adds 22 tokens to every session and 16,698 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it C with 2 findings (hidden instructions, makes network calls). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.

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