nvmolkit-usage

nvmolkit-usage is a skill for Claude Code, Codex from NVIDIA-BioNeMo/bionemo-agent-toolkit. It costs 37 tokens per session (4,988 once invoked), scanned A, original, no licence file.

A guide to the installed nvMolKit Python API for GPU-accelerated chemistry operations based on RDKit-style data. It supports processing many molecules in batches.

In plain words
What is it for?
Use it for molecular fingerprints, similarity checks, 3D conformers, force-field optimization, RMSD and TFD comparisons, clustering, and substructure searches.
Why use it?
It provides the expected way to call the installed library instead of reimplementing common molecular calculations.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it for molecular fingerprints, similarity checks, 3D conformers, force-field optimization, RMSD and TFD comparisons, clustering, and substructure searches.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add NVIDIA-BioNeMo/bionemo-agent-toolkit --skill nvmolkit-usage
Clone the repo
git clone --depth 1 https://github.com/NVIDIA-BioNeMo/bionemo-agent-toolkit

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for nvmolkit-usage

README.md
[![agentmods](https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage/github.svg)](https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage)
Your own site
<a href="https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage"><img src="https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for nvmolkit-usage

Your own site · 80×15
<a href="https://agentmods.dev/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage"><img src="https://agentmods.dev/badge/skills/nvidia-bionemo/bionemo-agent-toolkit/nvmolkit-usage.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 37 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 4,988 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00037 $0.04988
Opus 5.5 $0.00015 $0.01995
Sonnet 5.5 $0.00007 $0.00998
Haiku 4.5 $0.00004 $0.00499

Measured yesterday against content hash 1d2c77103b92, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

nvmolkit-usage scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

library-skills/nvmolkit-usage/SKILL.md · 356 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Files

What ships with it

6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday Changed · +42 lines · -99 tokens per session 1d2c77103b92
  2. 1mo ago First seen · 314 lines · 136 tokens per session scan A 1e7aa4102c10

Subscribe to this mod's changes

nvmolkit-usage is a skill published in the GitHub repository NVIDIA-BioNeMo/bionemo-agent-toolkit (484 stars, last pushed today), with no licence file. It adds 37 tokens to every session and 4,988 once invoked, about $0.0001 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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