agri-paper

agri-paper is a skill for Claude Code from PangenomeAI/academic-skills-food-nutrition. It costs 173 tokens per session (931 once invoked), scanned A, original, MIT.

A multi-step manuscript workflow for agricultural science, from understanding the research question and organising data to writing, figures, citations, formatting, and internal review.

In plain words
What is it for?
It helps frame questions, curate data, plan statistics, create figures and tables, write and revise sections, manage citations, convert formats, and review manuscripts.
Why use it?
It gives researchers a structured way to turn agricultural research into a complete paper while keeping the target journal in mind.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: mentions subagents.

Part of the academic-skills-food-nutrition plugin — 41 skills shipped together

Good fit It helps frame questions, curate data, plan statistics, create figures and tables, write and revise sections, manage citations, convert formats, and review manuscripts.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/pangenomeai/academic-skills-food-nutrition/agri-paper
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add PangenomeAI/academic-skills-food-nutrition --skill agri-paper
Clone the repo
git clone --depth 1 https://github.com/PangenomeAI/academic-skills-food-nutrition

Made for: Claude Code.

Or install academic-skills-food-nutrition, the plugin that ships this one along with the rest of its 41 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for agri-paper

README.md
[![agentmods](https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-paper/github.svg)](https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-paper)
Your own site
<a href="https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-paper"><img src="https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-paper/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for agri-paper

Your own site · 80×15
<a href="https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-paper"><img src="https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-paper.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 173 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 931 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00173 $0.00931
Opus 5 $0.00086 $0.00465
Sonnet 5 $0.00035 $0.00186
Haiku 4.5 $0.00017 $0.00093

Measured 12d ago against content hash afed5930e38c, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

agri-paper scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

agri-paper/SKILL.md · 57 lines

How it starts

The opening of the file, as written. The whole thing — 57 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Agri-Paper — Manuscript System for Agricultural Science

Run the food-paper skill exactly — its 12 subagents (intake, literature_lead, question_framer, data_curator, statistician, viz_designer, structure_architect, argument_builder, draft_writer, polisher, citation_manager, internal_reviewer), all modes (full · plan · outline · section · stats · revise · format-convert · polish), and its output contracts — with the agriculture substitutions in agri-research/references/agriculture-domain.md. Read that file first. No new machinery here.

The substitutions

  1. Persona — a senior agricultural scientist of the specific discipline; name it and write to its standards (domain §2).
  2. Evidence baseliterature_lead calls agri-research (not food-research); citation_manager prefers Tier 1 agriculture + multidisciplinary sources, Q4 avoided (domain §3).
  3. Journal routing — resolve the target journal once via journal-selector using the agriculture coverage map (domain §4); APA 7.0 if 'generic'.

Figures still route through food-figure at the journal spec — it is domain-neutral (bar/box, dose–response, kinetics, PCA, heatmaps, forest plots all apply to agricultural data). Revision still follows food-paper/references/revision-response.md; peer review calls agri-review.

Agricultural reporting (domain §5) — enforce in Methods and Results

  • Field trials: site (coordinates), season(s)/years, soil type and classification, cultivar/genotype, plot size, design (RCBD/split-plot/Latin square) and replication, agronomic management, and the statistical model.
  • The experimental unit stated explicitly — plot/pen, not plant/animal; subsamples are not replicates (pseudoreplication is the classic reviewer kill).
  • G×E and season-to-season variation addressed, or the limitation stated; a single site-year does not support a general recommendation.
  • Animal work: ethics approval + ARRIVE; housing, diet composition, unit.
  • Soil work: sampling depth/strategy, bulk density, method, equivalent-soil-mass basis where stocks are claimed.
  • Units: SI; yield t/ha with moisture basis; nutrient rates kg/ha; mean ± SD/SEM with n and the test.

Read the full file on GitHub · 57 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 57 lines · 173 tokens per session scan A afed5930e38c

Subscribe to this mod's changes

agri-paper is a skill published in the GitHub repository PangenomeAI/academic-skills-food-nutrition (31 stars, last pushed 12d ago), licensed MIT. It adds 173 tokens to every session and 931 once invoked, about $0.0009 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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