agri-pipeline

agri-pipeline is a skill for Claude Code from PangenomeAI/academic-skills-food-nutrition. It costs 157 tokens per session (1,036 once invoked), scanned A, original, MIT.

A coordinator for the full agricultural research-to-publication process. It routes work through research, writing, figures, peer review, revision, and final formatting stages.

In plain words
What is it for?
It helps select a journal, conduct research, write a paper, create figures, run reviews, revise the manuscript, re-review changes, and prepare the final format.
Why use it?
It connects separate agricultural workflows and quality checks so a project can move through publication stages in a defined order.

Skill for Claude Code

Written for Claude Code: shipped in a Claude Code plugin. Also seen: mentions subagents.

Part of the academic-skills-food-nutrition plugin — 41 skills shipped together

Good fit It helps select a journal, conduct research, write a paper, create figures, run reviews, revise the manuscript, re-review changes, and prepare the final format.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add PangenomeAI/academic-skills-food-nutrition --skill agri-pipeline
Clone the repo
git clone --depth 1 https://github.com/PangenomeAI/academic-skills-food-nutrition

Made for: Claude Code.

Or install academic-skills-food-nutrition, the plugin that ships this one along with the rest of its 41 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for agri-pipeline

README.md
[![agentmods](https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline/github.svg)](https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline)
Your own site
<a href="https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline"><img src="https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for agri-pipeline

Your own site · 80×15
<a href="https://agentmods.dev/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline"><img src="https://agentmods.dev/badge/skills/pangenomeai/academic-skills-food-nutrition/agri-pipeline.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 157 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,036 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00157 $0.01036
Opus 5 $0.00078 $0.00518
Sonnet 5 $0.00031 $0.00207
Haiku 4.5 $0.00016 $0.00104

Measured 12d ago against content hash abc8529cd7b1, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

agri-pipeline scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

agri-pipeline/SKILL.md · 66 lines

How it starts

The opening of the file, as written. The whole thing — 66 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Agri-Pipeline — Research-to-Publication for Agricultural Science

Run the food-pipeline skill exactly — its subagents (intake_router, quality_gate), its stages 0–6, its quality gates, its mode advisor, and its review/revision authorization defaults — with the agriculture substitutions in agri-research/references/agriculture-domain.md. Read that file first. No new machinery here.

The substitutions

  1. Persona — a senior agricultural scientist of the specific discipline, carried into every stage and every skill it dispatches (domain §2).
  2. Route to the agri-* skills, not the food ones:
Stage Skill
0 · ROUTE intake_router + journal-selector (agriculture coverage map)
1 · RESEARCH agri-research (or agri-deep-research)
2 · WRITE agri-paper → figures via food-figure (domain-neutral)
3 · REVIEW agri-review
4 · REVISE agri-paper (revise)
5 · RE-REVIEW agri-review (re-review)
6 · FINALIZE agri-paper (format-convert)
  1. Evidence base — Tier 1 Q1/Q2 agriculture + Nature/Science/Cell/PNAS + Q1/Q2 adjacent disciplines; Q3 for gaps; Q4 avoided (domain §3).

food-figure is used directly and deliberately — it is domain-neutral and already renders at the journal spec.

Inherited unchanged (not optional)

  • Journal resolved once at ROUTE via journal-selector and passed to every downstream skill, so none re-asks.
  • Knowledge reuse: when Stage 1 runs, its evidence base is carried into Stages 3/5 so agri-review does not re-search the field — it reuses it and tops up with agri-research quick brief key reviews read in full.
  • Review/revision defaults: one review→revise round; a second round and in-place Tracked Changes on the original Word file each require explicit author authorization.
  • Deliverables — exactly two files, both .docx: one manuscript, and one Review_and_Response_Report_<slug>_<date>.docx carrying both the reviewer feedback and the editing responseagri-review writes the feedback at Stage 3, agri-paper fills each Response (type) into that same file at Stage 4, and an authorized round 2 appends R2-* items to it. No separate reviewer report, no standalone response letter, never Markdown (food-review/references/report-format.md).
  • Quality gates, anti-fabrication grounding, four-gate citations, privacy scan, human-writing.md, and the mandatory AI-use disclosure.

Read the full file on GitHub · 66 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 66 lines · 157 tokens per session scan A abc8529cd7b1

Subscribe to this mod's changes

agri-pipeline is a skill published in the GitHub repository PangenomeAI/academic-skills-food-nutrition (31 stars, last pushed 12d ago), licensed MIT. It adds 157 tokens to every session and 1,036 once invoked, about $0.0008 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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