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co-scientist-doctor

co-scientist-doctor is a skill for Claude Code, Codex from panjose/Co-Scientist. It costs 0 tokens per session (485 once invoked), scanned A, original, Apache-2.0.

A diagnostic step for checking whether a local Co-Scientist project and its dashboard are ready to run.

In plain words
What is it for?
Use it to inspect project health, understand blocked validation or state inspection, and find commands for fixing dashboard setup issues.
Why use it?
It shows failures and warnings across Python, dependencies, environments, dashboard tools, builds, and installed project skills.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: mentions Claude Code.

not rated 5repo 3mo ago A scan 0 tokens original Apache-2.0

Good fit Use it to inspect project health, understand blocked validation or state inspection, and find commands for fixing dashboard setup issues.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/panjose/co-scientist/co-scientist-doctor
View source ↗ panjose/Co-Scientist
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add panjose/Co-Scientist --skill co-scientist-doctor
Clone the repo
git clone --depth 1 https://github.com/panjose/Co-Scientist

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for co-scientist-doctor

README.md
[![agentmods](https://agentmods.dev/badge/skills/panjose/co-scientist/co-scientist-doctor/github.svg)](https://agentmods.dev/skills/panjose/co-scientist/co-scientist-doctor)
Your own site
<a href="https://agentmods.dev/skills/panjose/co-scientist/co-scientist-doctor"><img src="https://agentmods.dev/badge/skills/panjose/co-scientist/co-scientist-doctor/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for co-scientist-doctor

Your own site · 80×15
<a href="https://agentmods.dev/skills/panjose/co-scientist/co-scientist-doctor"><img src="https://agentmods.dev/badge/skills/panjose/co-scientist/co-scientist-doctor.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 0 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 485 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00000 $0.00485
Opus 5 $0.00000 $0.00243
Sonnet 5 $0.00000 $0.00097
Haiku 4.5 $0.00000 $0.00049

Measured 12d ago against content hash 82c610a93043, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

co-scientist-doctor scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

skills/skills-claude-entry/co-scientist-doctor/SKILL.md · 61 lines

What it actually says

co-scientist-doctor

Goal:

  • Run the Co-Scientist environment diagnostics and explain any failing or warning checks to the user.

Expected input:

  • no arguments for the default project-local doctor

Execution steps:

  1. Run:

    python -m tools.host.claude_project_cli doctor

    or, when machine-readable output is needed:

    python -m tools.host.claude_project_cli doctor --format json

  2. Read the emitted diagnostic output and summarize:

    • Python version health
    • Python dependency health
    • active environment / conda or virtualenv status
    • dashboard tooling (node, pnpm)
    • dashboard install/build readiness
    • project-local skill installation state
    • how budget, iteration-policy, iteration-band, stop-policy, and human-checkpoint divide responsibility
    • how dashboard ready URLs are resolved after a background bootstrap
    • what inspect_state or validation blocked means operationally

  3. If the dashboard checks warn, recommend:

    pnpm --dir apps/dashboard install
pnpm --dir apps/dashboard build

  4. If the dashboard checks pass, remind the user:

    • fresh start, run, and resume commands try a background dashboard bootstrap
    • python -m tools.host.claude_project_cli dashboard <run-dir> resolves the ready dashboard URL
    • runs/<run_id>/dashboard/LINKS.md is the human-readable dashboard receipt
    • budget controls per-round intensity, while iteration-policy controls semantic vs capped stopping
    • human-checkpoint=auto means completion-driven runs should not pause after every evolution round
    • inspect_state means review/ranking/evolution artifacts disagree and need repair before resume or overview

  5. If the project-local skills are not installed, recommend:

    powershell -File tools/install/install_co_scientist.ps1

Rules:

  • Prefer conda run -n <env> python ... over conda activate when the user is running commands through Claude Code shells.
  • Treat doctor warnings as actionable guidance, not as fatal runtime errors unless the check status is fail.
Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 61 lines · 0 tokens per session scan A 82c610a93043

Subscribe to this mod's changes

co-scientist-doctor is a skill published in the GitHub repository panjose/Co-Scientist (5 stars, last pushed 3mo ago), licensed Apache-2.0. It costs nothing until one of its globs matches a file; then it loads 485 tokens. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

Claude CodeScientificco-scientisthypothesis-generationreproducible-researchresearch-agentscientific-discovery
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