bio-applied-coverage-tracks

bio-applied-coverage-tracks is a skill for Claude Code, Codex from Pavel-Kravchenko/Bioinformatics. It costs 107 tokens per session (2,404 once invoked), scanned A, original, no licence file.

A bioinformatics tool for turning BAM sequencing files into normalized bigWig signal tracks and visual summaries. BAM files store aligned sequencing reads, while bigWig files store signal values that are easier to view and compare.

In plain words
What is it for?
Use it to create coverage tracks, compare BAM files, summarize read coverage, and plot signal around transcription start sites or other genomic regions.
Why use it?
It helps compare sequencing signals across samples and inspect where signal appears around genes or selected regions. The description does not specify a particular experiment beyond examples such as ChIP and input data.

Skill for Claude CodeCodex

Which agent this was written for is unclear — body not stored (licence); the path alone says nothing.

Good fit Use it to create coverage tracks, compare BAM files, summarize read coverage, and plot signal around transcription start sites or other genomic regions.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Pavel-Kravchenko/Bioinformatics --skill bio-applied-coverage-tracks
Clone the repo
git clone --depth 1 https://github.com/Pavel-Kravchenko/Bioinformatics

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for bio-applied-coverage-tracks

README.md
[![agentmods](https://agentmods.dev/badge/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks/github.svg)](https://agentmods.dev/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks)
Your own site
<a href="https://agentmods.dev/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks"><img src="https://agentmods.dev/badge/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for bio-applied-coverage-tracks

Your own site · 80×15
<a href="https://agentmods.dev/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks"><img src="https://agentmods.dev/badge/skills/pavel-kravchenko/bioinformatics/bio-applied-coverage-tracks.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 107 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 2,404 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00107 $0.02404
Opus 5 $0.00053 $0.01202
Sonnet 5 $0.00021 $0.00481
Haiku 4.5 $0.00011 $0.00240

Measured 11d ago against content hash 6a53543b3621, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

bio-applied-coverage-tracks scanned grade A with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 11d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Runs shell commandslowCapability

Expected in a hook, worth knowing in a rule or an instructions file.

subprocess.run(cmd, check=True)
Skills/bio-applied-coverage-tracks/SKILL.md · 178 lines

The source is not reproduced here

No licence file

A repository with no LICENSE is all rights reserved by default, so the body is not copied here. The metadata, the measurements and the link are.

Read it on GitHub

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 11d ago First seen · 178 lines · 107 tokens per session scan A 6a53543b3621

Subscribe to this mod's changes

bio-applied-coverage-tracks is a skill published in the GitHub repository Pavel-Kravchenko/Bioinformatics (5 stars, last pushed 2mo ago), with no licence file. It adds 107 tokens to every session and 2,404 once invoked, about $0.0005 per session on Opus 5. A static security scan graded it A with 1 finding (runs shell commands). No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.