Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add pedrohcgs/Claude-Mini --skill validate-bibgit clone --depth 1 https://github.com/pedrohcgs/Claude-MiniWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/pedrohcgs/claude-mini/validate-bib)<a href="https://agentmods.dev/skills/pedrohcgs/claude-mini/validate-bib"><img src="https://agentmods.dev/badge/skills/pedrohcgs/claude-mini/validate-bib.svg" alt="Measured on agentmods" height="20"></a>What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00047 | $0.01435 |
| Opus 5 | $0.00023 | $0.00718 |
| Sonnet 5 | $0.00009 | $0.00287 |
| Haiku 4.5 | $0.00005 | $0.00144 |
Grade A, and why
validate-bib scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 8d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
This is a copy
94% identical to validate-bib — 5 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.
How it starts
The opening of the file, as written. The whole thing — 157 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Validate Bibliography
Cross-reference citations in lecture files against bibliography entries. Two modes:
- Default (structural): missing entries, unused entries, malformed fields, typo candidates.
--semantic: adds citation-drift detection (duplicate entries for the same paper), DOI verification via crossref, and citation-style consistency within each file.
Report saved to quality_reports/bib_audit_[structural|semantic].md.
Mode 1: Structural (default)
Steps
-
Read the bibliography file and extract all citation keys.
-
Scan lecture files for citation keys:
.tex:\cite{,\citet{,\citep{,\citeauthor{,\citeyear{,\textcite{,\parencite{.qmd/.md:@key,[@key],[@key1; @key2]- Extract all unique citation keys used.
-
Cross-reference:
- Missing entries (CRITICAL): cited in lectures, absent from
.bib. - Unused entries (informational): in
.bibbut never cited. - Typo candidates: keys within edit-distance 2 of a
.bibkey (e.g.,Smith2020vsSmth2020).
- Missing entries (CRITICAL): cited in lectures, absent from
-
Check entry quality:
- Required fields present (author, title, year, journal/booktitle).
- Author field properly formatted.
- Year in 1900–current.
- No malformed characters / encoding issues.
doifield normalized (no leadinghttps://doi.org/).
-
Write report to
quality_reports/bib_audit_structural.md.
Files scanned
Slides/*.tex
Quarto/*.qmd
guide/*.qmd
master_supporting_docs/**/*.tex
Bibliography location
Bibliography_base.bib at repo root by default; override via CLAUDE.md.
Mode 2: Semantic (--semantic)
Everything in Mode 1, plus:
2a. Citation drift detection
Multiple .bib entries describing the same paper under different keys. Symptoms:
Smith2020+Smith2020awith identical DOI or title.CallawaySantAnna2021+CS2021both pointing to the same paper.- Collaborator-merged
.bibfiles.
Detection heuristics (any → FLAG):
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 8d ago First seen · 157 lines · 47 tokens per session scan A a88de1e0fe1f
validate-bib is a skill published in the GitHub repository pedrohcgs/Claude-Mini (11 stars, last pushed 4mo ago), licensed MIT. It adds 47 tokens to every session and 1,435 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it A with 0 findings. It is 94% identical to validate-bib, differing in 5 lines, and is treated as a copy.
Other skills, from other repositories
instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…
exploratory-data-analysis
Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…
matlab
Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.
phylogenetics
Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
research-engineer
An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.
mapping-to-snomed
Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…