What is research-wiki?

A persistent research knowledge base for storing papers, ideas, experiments, and scientific claims and the links between them. It keeps this information across the research project instead of treating each literature search as a separate task.

Use it to add papers, record ideas and experiment results, track claims, and query a growing map of a research field.

It reduces repeated reading and helps preserve how evidence, experiments, and ideas relate to one another over time.

research-wiki — Skill for Claude Code by raja21068/AutoResearch

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent

npx skills add raja21068/AutoResearch --skill research-wiki

Clone the repo

git clone --depth 1 https://github.com/raja21068/AutoResearch

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

README.md

[![agentmods](https://agentmods.dev/badge/skills/raja21068/autoresearch/research-wiki/github.svg)](https://agentmods.dev/skills/raja21068/autoresearch/research-wiki)

Your own site

<a href="https://agentmods.dev/skills/raja21068/autoresearch/research-wiki"><img src="https://agentmods.dev/badge/skills/raja21068/autoresearch/research-wiki/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

Your own site · 80×15

<a href="https://agentmods.dev/skills/raja21068/autoresearch/research-wiki"><img src="https://agentmods.dev/badge/skills/raja21068/autoresearch/research-wiki.svg" alt="Reviewed on agentmods" width="80" height="20"></a>

Per session 73 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.

When invoked 4,208 The whole file, excluding the scripts and references it only reads on demand.

Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.

Origin 88% copy Near-identical to another mod in the catalogue.

Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

Model	Per session	Once invoked
Fable 5.1	$0.00073	$0.04208
Opus 5.5	$0.00029	$0.01683
Sonnet 5.5	$0.00015	$0.00842
Haiku 4.5	$0.00007	$0.00421

Measured 2mo ago against content hash b5588aeda690, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

research-wiki scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 2mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

88% identical to research-wiki — 121 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/aris/research-wiki/SKILL.md · 410 lines

How it starts

The opening of the file, as written. The whole thing — 410 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Research Wiki: Persistent Research Knowledge Base

Subcommand: $ARGUMENTS

Overview

The research wiki is a persistent, per-project knowledge base that accumulates structured knowledge across the entire ARIS research lifecycle. Unlike one-off literature surveys that are used and forgotten, the wiki compounds — every paper read, idea tested, experiment run, and review received makes the wiki smarter.

Inspired by Karpathy's LLM Wiki pattern: compile knowledge once, keep it current, don't re-derive on every query.

Core Concepts

Four Entity Types

Entity	Directory	Node ID format	What it represents
Paper	`papers/`	`paper:<slug>`	A published or preprint research paper
Idea	`ideas/`	`idea:<id>`	A research idea (proposed, tested, or failed)
Experiment	`experiments/`	`exp:<id>`	A concrete experiment run with results
Claim	`claims/`	`claim:<id>`	A testable scientific claim with evidence status

Typed Relationships (`graph/edges.jsonl`)

Edge type	From → To	Meaning
`extends`	paper → paper	Builds on prior work
`contradicts`	paper → paper	Disagrees with results/claims
`addresses_gap`	paper\|idea → gap	Targets a known field gap
`inspired_by`	idea → paper	Idea sourced from this paper
`tested_by`	idea\|claim → exp	Tested in this experiment
`supports`	exp → claim\|idea	Experiment confirms claim
`invalidates`	exp → claim\|idea	Experiment disproves claim
`supersedes`	paper → paper	Newer work replaces older

Edges are stored in graph/edges.jsonl only. The ## Connections section on each page is auto-generated from the graph — never hand-edit it.

Wiki Directory Structure

research-wiki/
  index.md               # categorical index (auto-generated)
  log.md                 # append-only timeline
  gap_map.md             # field gaps with stable IDs (G1, G2, ...)
  query_pack.md          # compressed summary for /idea-creator (auto-generated, max 8000 chars)
  papers/
    <slug>.md            # one page per paper
  ideas/
    <idea_id>.md         # one page per idea
  experiments/
    <exp_id>.md          # one page per experiment
  claims/
    <claim_id>.md        # one page per testable claim
  graph/
    edges.jsonl          # materialized current relationship graph

Read the full file on GitHub · 410 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

2mo ago First seen · 410 lines · 73 tokens per session scan A b5588aeda690

Subscribe to this mod's changes

research-wiki is a skill published in the GitHub repository raja21068/AutoResearch (2 stars, last pushed 6mo ago), licensed MIT. It adds 73 tokens to every session and 4,208 once invoked, about $0.0003 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 88% identical to research-wiki, differing in 121 lines, and is treated as a copy.

Claude Code Research Scientific agentic-ai anthropic antigravity arvix automated-paper-writing

research-wiki next to 6 skills from other repositories
Mod	Type	Stars	Last push	Licence	Scan	Tokens	Works with
research-wikiraja21068/AutoResearch	Skill	2	6mo ago	MIT	A	73	Claude Code
content-refinement-agentAr9av/PaperOrchestra	Skill	701	9d ago	none	A	145	Claude Code, Codex
section-writing-agentAr9av/PaperOrchestra	Skill	701	9d ago	none	A	125	Claude Code, Codex
plotting-agentAr9av/PaperOrchestra	Skill	701	9d ago	none	A	102	Claude Code, Codex
outline-agentAr9av/PaperOrchestra	Skill	701	9d ago	none	A	99	Claude Code, Codex
paper-autoratersAr9av/PaperOrchestra	Skill	701	9d ago	none	A	121	Claude Code, Codex
paper-writing-benchAr9av/PaperOrchestra	Skill	701	9d ago	none	A	97	Claude Code, Codex