scdenney/open-science-skills

Agentic skills for Claude Code and Codex, built from published social-science methods sources. Covers experimental design, computational text analysis, manuscript QA, and transparent reporting.

55Stars on the repository
98Mods indexed here, across every type
yesterdayLast push, which is what freshness is scored on
customA LICENSE file GitHub cannot name, so bodies are not copied

replication-package

25

scdenney/open-science-skills

Skill Codex

Scaffold or audit a social-science replication package, and audit the manuscript and its archived research objects against the FAIR principles. Scaffold mode writes the folder structure, README, master.R, figure/table crosswalk, codebook template, LICENSE placeholder, .gitignore, and pre-release checklist. Audit mode…

not rated 55 +1 changed 8d ago A 186 tokens

research-repo

26

scdenney/open-science-skills

Skill Codex

Scaffold or audit an entire research project repository organized around its source library. Use when starting, structuring, organizing, or reviewing a research repo. Build sources/{og,md,unprocessed}, references.bib, a PDF-to-Markdown converter, a repo-local process-source skill, AGENTS.md, .gitignore, .venv, and the…

not rated 55 +1 yesterday A 102 tokens

research-wayfinder

27

scdenney/open-science-skills

Skill Codex

Plan a research project as a durable decision map, resolving one design decision per session until the destination is a defensible, pre-registerable design. Not for executing analyses or writing the paper. Use at the start of a project, when a design has more open decisions than one conversation holds, or when…

not rated 55 +1 changed 8d ago A 68 tokens

spawn

28

scdenney/open-science-skills

Skill Codex

Spawn full peer Codex or Claude sessions in their own panes and git worktrees — real sessions, not subagents — briefed by the lead and merged back. Not for bounded consults a subagent covers. Use when work must outlive or run beside this session, needs its own worktree, or must stay user-steerable.

not rated 55 +1 changed 2d ago A 71 tokens

survey-data-audit

29

scdenney/open-science-skills

Skill Codex

Audit fielded survey response data for registered elements, data quality, bot and AI-automation screening, and sample integrity. Emits an appendix-ready quality report.

not rated 55 +1 yesterday A 36 tokens

survey-design

30

scdenney/open-science-skills

Skill Codex

Designs survey instruments — item-specific question wording that avoids acquiescence, double-barreling, and leading language, scale construction (points, labeling, polarity, feeling thermometers, index reliability with Cronbach's alpha and McDonald's omega), flow and ordering with treatment placement and buffer items…

not rated 55 +1 changed 8d ago A 156 tokens

tables

31

scdenney/open-science-skills

Skill Codex

Design and format publication-quality tables. Use for column order, row grouping, notes, statistical precision, accessibility, and reproducibility.

not rated 55 +1 changed 8d ago A 28 tokens

text-classification

32

scdenney/open-science-skills

Skill Codex

Designs and validates LLM-based text classification for research data — codebook construction, choice of learning regime, model selection and reproducibility, prompt construction, pilot validation against human coding with agreement statistics (kappa, F1), hybrid human-LLM workflows, and reporting model-coded data.…

not rated 55 +1 changed 5d ago A 162 tokens

topic-modeling

33

scdenney/open-science-skills

Skill Codex

Specifies and diagnoses structural topic models for survey and experimental text — choosing among STM, LDA, and BERTopic, preprocessing decisions and their consequences, prevalence and content formulas with spectral initialization and a recorded seed, selecting the topic count across semantic coherence, exclusivity…

not rated 55 +1 changed 8d ago A 152 tokens

orchestrate

34

scdenney/open-science-skills

Skill Codex

Orchestrate complex work from an active gpt-6-astra or gpt-5.6-sol Codex session. The detected lead owns decomposition, integration, and verification; Astra keeps the hardest reasoning in the lead, while Sol escalates unusually difficult units to Astra. Both route bounded work to cheaper GPT-5.6 tiers and can use a…

not rated 55 +1 changed 5d ago A 124 tokens

referee-response

35

scdenney/open-science-skills

Skill Claude CodeCodex

Organizes and formats an author's response to peer review — extracts every distinct point from the referee reports and the editor's letter, tags severity and type, maps the dependencies so the revision runs in the right order, flags which points the author may want to push back on, and builds the response-to-reviewers…

not rated 55 +1 yesterday A 172 tokens

research-grill

36

scdenney/open-science-skills

Skill Claude CodeCodex

Interviews a researcher, in rounds, until a research idea, design, or draft has no silently assumed decision left — every question numbered, each with a plain-language "why this matters" and a recommended answer, facts fetched by the assistant rather than asked, and every settled decision written to a file. Three…

not rated 55 +1 yesterday A 241 tokens

vlm-ocr

37

scdenney/open-science-skills

Skill Codex

OCR scanned or image-only corpora with vision-language models, in three phases. Use evaluate to compare candidate OCR systems against stratified human ground truth and pick one on measured CER/WER, run to build the production pipeline (model selection, image handling, prompts, architecture, batching, accuracy…

not rated 55 +1 yesterday A 120 tokens

deliverable-intake

38

scdenney/open-science-skills

Skill Claude CodeCodex

Turns raw captures, dictated braindumps in a deliverable’s inbox/, or recent macwhspr dictation-log entries into proposed planning-wiki changes, shown as a unified diff for author acceptance or rejection. Classifies every capture line as a decision, evidence claim, question, task, or dropped item with a reason, and…

not rated 55 +1 yesterday A 145 tokens

deliverable-lint

39

scdenney/open-science-skills

Skill Claude CodeCodex

Reviews a whole deliverable, such as a talk, course module, paper, chapter, or referee report, against its manifest without rewriting. Runs a deterministic gate for build, citations, numbers, facts, and leaks, then stops on failure. It assigns a cheap finder to each section, runs a strong-model whole-work pass, and…

not rated 55 +1 yesterday A 144 tokens

deliverable-open

40

scdenney/open-science-skills

Skill Claude CodeCodex

Opens a deliverable, such as a talk, course module, paper, book chapter, or referee report, for AI-assisted work across sessions. Interviews the author until the manifest is written, then scaffolds deliverable.yml, append-only HANDOFF.md, a numbered planning/ wiki with index and open questions, inbox/ for dictated…

not rated 55 +1 yesterday A 130 tokens

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