med-paper-assistant: Skill for Claude Code

.claude/skills/pubmed-paper-exploration/SKILL.md

pubmed-paper-exploration is a skill for Claude Code from u9401066/med-paper-assistant. It costs 56 tokens per session (1,263 once invoked), scanned A, original, Apache-2.0.

A research-exploration workflow that starts with one key paper and follows related papers, its references, papers that cite it and the resulting citation network.

In plain words
What is it for?
Use it to find similar studies, inspect cited and citing papers, compare citation metrics, build a citation tree or create a research timeline.
Why use it?
It helps researchers understand how a study connects to earlier and later work instead of searching for papers one at a time.

Skill for Claude Code

Written for Claude Code: installed under .claude/.

This is u9401066/med-paper-assistant's own configuration. It tells Claude Code how to work on med-paper-assistant itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything med-paper-assistant configures →

Reuse

Borrowing it

Nothing to install: this file belongs to u9401066/med-paper-assistant. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/u9401066/med-paper-assistant/master/.claude/skills/pubmed-paper-exploration/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/u9401066/med-paper-assistant

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for pubmed-paper-exploration

README.md
[![agentmods](https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-paper-exploration/github.svg)](https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-paper-exploration)
Your own site
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-paper-exploration"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-paper-exploration/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for pubmed-paper-exploration

Your own site · 80×15
<a href="https://agentmods.dev/skills/u9401066/med-paper-assistant/pubmed-paper-exploration"><img src="https://agentmods.dev/badge/skills/u9401066/med-paper-assistant/pubmed-paper-exploration.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 56 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,263 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00056 $0.01263
Opus 5 $0.00028 $0.00632
Sonnet 5 $0.00011 $0.00253
Haiku 4.5 $0.00006 $0.00126

Measured 12d ago against content hash 3dfeef604ada, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-11, from the pricing page.

Security

Grade A, and why

pubmed-paper-exploration scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

Copies of this mod

3 near-identical copies found in the catalogue:

.claude/skills/pubmed-paper-exploration/SKILL.md · 200 lines

How it starts

The opening of the file, as written. The whole thing — 200 lines — stays where its author put it; the contents beside it link to each section on GitHub.

論文深度探索

描述

這個 workflow 用在「已經有一篇關鍵論文」之後的深挖。你可以沿三個方向展開:相似文獻、這篇引用了誰、誰又引用了它,再進一步建立 citation tree 或研究時間軸。

觸發條件

  • 「這篇論文的相關研究」
  • 「誰引用這篇?」
  • 「這篇建立在誰的研究上?」
  • 「幫我畫這篇論文的 citation tree」
  • 已提供 PMID 或明確的種子論文標題

如果還沒有 PMID

先用 unified_search 找到種子論文:

unified_search(
    query="remimazolam randomized controlled trial",
    limit=5,
    ranking="quality"
)

拿到 PMID 後,再進入下面 workflow。


核心探索方向

工具 作用 方向
fetch_article_details 取得文章完整資訊 當前論文
find_related_articles 找主題相近文章 橫向
get_article_references 找這篇引用了誰 往過去
find_citing_articles 找誰引用這篇 往未來
get_citation_metrics 看引用影響力 評估重要性
build_citation_tree 建立引用網路 視覺化
build_research_timeline 建立時間軸 演化脈絡

最常用範例

1. 先拿文章細節

fetch_article_details(pmids="30217674")

2. 找相似文章

find_related_articles(pmid="30217674", limit=10)

3. 找這篇引用了誰

get_article_references(pmid="30217674", limit=30)

4. 找誰引用了這篇

find_citing_articles(pmid="30217674", limit=20)

5. 看哪幾篇最有影響力

get_citation_metrics(
    pmids="30217674,35678901,34567890",
    sort_by="relative_citation_ratio"
)

6. 直接建 citation tree

build_citation_tree(
    pmid="30217674",
    depth=2,
    direction="both",
    output_format="mermaid"
)

建議工作流程

情境:從一篇關鍵 RCT 往外展開

# Step 1: 當前論文
fetch_article_details(pmids="30217674")

# Step 2: 三個方向同時展開
find_related_articles(pmid="30217674", limit=10)
get_article_references(pmid="30217674", limit=20)
find_citing_articles(pmid="30217674", limit=20)

# Step 3: 對重要 PMIDs 做引用影響力排序
get_citation_metrics(
    pmids="35678901,34567890,33456789",
    sort_by="citation_count"
)

# Step 4: 視覺化引用網路
build_citation_tree(
    pmid="30217674",
    depth=2,
    direction="both",
    output_format="cytoscape"
)

Read the full file on GitHub · 200 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 200 lines · 56 tokens per session scan A 3dfeef604ada

Subscribe to this mod's changes

pubmed-paper-exploration is a skill published in the GitHub repository u9401066/med-paper-assistant (12 stars, last pushed 10d ago), licensed Apache-2.0. It adds 56 tokens to every session and 1,263 once invoked, about $0.0003 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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