imaging-data-commons

imaging-data-commons is a skill for Claude Code, Codex from x-cmd/skill. It costs 62 tokens per session (9,708 once invoked), scanned A, a copy of imaging-data-commons, Apache-2.0.

A tool for finding and downloading public cancer scans and pathology images from the NCI Imaging Data Commons. The collection includes medical images such as CT, MRI, and PET scans, with searchable information about each dataset.

In plain words
What is it for?
Use it to search imaging metadata, select and download DICOM files, view scan series, and prepare radiology or pathology datasets for research and AI training.
Why use it?
It removes the need to locate and download large imaging datasets manually. It also helps researchers inspect available data and open selected scans in a browser viewer.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one.

Needs its repository: it runs a file that does not travel with it, so clone the repository first. The line is # Results in: ./data/tcga_luad/TCGA-05-4244/CT/.

Good fit Use it to search imaging metadata, select and download DICOM files, view scan series, and prepare radiology or pathology datasets for research and AI training.

Compare 6 skills from other repositories ↓
Install

Getting it into your agent

It runs from inside its repository, so the clone comes first — what it calls does not travel with the file alone.

Clone the repo
git clone --depth 1 https://github.com/x-cmd/skill
agentmods
npx agentmods add skills/x-cmd/skill/imaging-data-commons

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for imaging-data-commons

README.md
[![agentmods](https://agentmods.dev/badge/skills/x-cmd/skill/imaging-data-commons/github.svg)](https://agentmods.dev/skills/x-cmd/skill/imaging-data-commons)
Your own site
<a href="https://agentmods.dev/skills/x-cmd/skill/imaging-data-commons"><img src="https://agentmods.dev/badge/skills/x-cmd/skill/imaging-data-commons/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for imaging-data-commons

Your own site · 80×15
<a href="https://agentmods.dev/skills/x-cmd/skill/imaging-data-commons"><img src="https://agentmods.dev/badge/skills/x-cmd/skill/imaging-data-commons.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 62 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 9,708 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe.
Origin 92% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00062 $0.09708
Opus 5.5 $0.00025 $0.03883
Sonnet 5.5 $0.00012 $0.01942
Haiku 4.5 $0.00006 $0.00971

Measured 1mo ago against content hash ce4e7699f347, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

imaging-data-commons scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 1mo ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

Origin

This is a copy

92% identical to imaging-data-commons — 39 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

data/k-dense-ai/imaging-data-commons/SKILL.md · 1,151 lines

How it starts

The opening of the file, as written. The whole thing — 1,151 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Imaging Data Commons

Overview

Use the idc-index Python package to query and download public cancer imaging data from the National Cancer Institute Imaging Data Commons (IDC). No authentication required for data access.

Primary tool: idc-index (GitHub)

Check current data scale for the latest version:

from idc_index import IDCClient
client = IDCClient()

# get IDC data version
print(client.get_idc_version())

# Get collection count and total series
stats = client.sql_query("""
    SELECT   
        COUNT(DISTINCT collection_id) as collections,
        COUNT(DISTINCT analysis_result_id) as analysis_results,
        COUNT(DISTINCT PatientID) as patients,
        COUNT(DISTINCT StudyInstanceUID) as studies,
        COUNT(DISTINCT SeriesInstanceUID) as series,
        SUM(instanceCount) as instances,
        SUM(series_size_MB)/1000000 as size_TB
    FROM index
""")
print(stats)

Core workflow:

  1. Query metadata → client.sql_query()
  2. Download DICOM files → client.download_from_selection()
  3. Visualize in browser → client.get_viewer_URL(seriesInstanceUID=...)

When to Use This Skill

  • Finding publicly available radiology (CT, MR, PET) or pathology (slide microscopy) images
  • Selecting image subsets by cancer type, modality, anatomical site, or other metadata
  • Downloading DICOM data from IDC
  • Checking data licenses before use in research or commercial applications
  • Visualizing medical images in a browser without local DICOM viewer software

IDC Data Model

IDC adds two grouping levels above the standard DICOM hierarchy (Patient → Study → Series → Instance):

  • collection_id: Groups patients by disease, modality, or research focus (e.g., tcga_luad, nlst). A patient belongs to exactly one collection.
  • analysis_result_id: Identifies derived objects (segmentations, annotations, radiomics features) across one or more original collections.

Use collection_id to find original imaging data, may include annotations deposited along with the images; use analysis_result_id to find AI-generated or expert annotations.

Read the full file on GitHub · 1,151 lines

Files

What ships with it

2 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 1mo ago First seen · 1,151 lines · 62 tokens per session scan A ce4e7699f347

Subscribe to this mod's changes

imaging-data-commons is a skill published in the GitHub repository x-cmd/skill (26 stars, last pushed 3mo ago), licensed Apache-2.0. It adds 62 tokens to every session and 9,708 once invoked, about $0.0002 per session on Opus 5.5. A static security scan graded it A with 0 findings. It is 92% identical to imaging-data-commons, differing in 39 lines, and is treated as a copy.

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