biomedical-search

biomedical-search is a skill for Claude Code, Codex from Zaoqu-Liu/ScienceClaw. It costs 30 tokens per session (1,418 once invoked), scanned B, a copy of biomedical-search, MIT.

A search tool for biomedical information across PubMed, bioRxiv and medRxiv preprints, clinical-trial records, and FDA drug labels. You can ask questions in everyday language.

In plain words
What is it for?
Use it to find research papers, unpublished studies, clinical trials, and official drug-label information, including full text and available figures.
Why use it?
It avoids searching each medical source separately and building specialized search queries for each one. Results from different sources are returned together.

Skill for Claude CodeCodex

Written for no agent in particular: nothing here depends on one. Also seen: reads .claude/ paths.

Good fit Use it to find research papers, unpublished studies, clinical trials, and official drug-label information, including full text and available figures.

Compare 6 skills from other repositories ↓
Install with agentmods
npx agentmods add skills/zaoqu-liu/scienceclaw/biomedical-search
Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

Any agent
npx skills add Zaoqu-Liu/ScienceClaw --skill biomedical-search
Clone the repo
git clone --depth 1 https://github.com/Zaoqu-Liu/ScienceClaw

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for biomedical-search

README.md
[![agentmods](https://agentmods.dev/badge/skills/zaoqu-liu/scienceclaw/biomedical-search/github.svg)](https://agentmods.dev/skills/zaoqu-liu/scienceclaw/biomedical-search)
Your own site
<a href="https://agentmods.dev/skills/zaoqu-liu/scienceclaw/biomedical-search"><img src="https://agentmods.dev/badge/skills/zaoqu-liu/scienceclaw/biomedical-search/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for biomedical-search

Your own site · 80×15
<a href="https://agentmods.dev/skills/zaoqu-liu/scienceclaw/biomedical-search"><img src="https://agentmods.dev/badge/skills/zaoqu-liu/scienceclaw/biomedical-search.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 30 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,418 The whole file, excluding the scripts and references it only reads on demand.
Security scan B 1 finding. A grade says what 26 rules found in the file — not that it is safe.
Origin 100% copy Near-identical to another mod in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00030 $0.01418
Opus 5 $0.00015 $0.00709
Sonnet 5 $0.00006 $0.00284
Haiku 4.5 $0.00003 $0.00142

Measured 9d ago against content hash b91b7118e805, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-09, from the pricing page.

Security

Grade B, and why

biomedical-search scanned grade B with 1 finding against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 9d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Reads agent configuration directoriesmediumAgent snooping

.claude/, .codex/, .gemini/ hold keys, settings and other credentials a mod has no legitimate need for.

BIOMEDICAL_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/biomedical-search/*/scripts/*" -type f 2>/dev/null | head -1)
Origin

This is a copy

100% identical to biomedical-search — 0 lines differ, which has more behind it and is treated as the original. This page carries a canonical link to it rather than competing with it.

skills/biomedical-search/SKILL.md · 215 lines

How it starts

The opening of the file, as written. The whole thing — 215 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Search across all major biomedical databases (PubMed, bioRxiv, medRxiv, ClinicalTrials.gov, FDA drug labels) simultaneously using natural language queries powered by Valyu's semantic search API.

Why This Skill is Powerful

  • No API Parameter Parsing: Just pass natural language queries directly - no need to construct complex search parameters
  • Semantic Search: Understands the meaning of your query, not just keyword matching
  • Full-Text Access: Returns complete content from literature, trials, and drug labels
  • Image Links: Includes figures and images when available
  • Comprehensive Coverage: Search across PubMed, bioRxiv, medRxiv, clinical trials, and drug labels simultaneously
  • Unified Results: Get results from all biomedical sources in a single query

Requirements

  1. Node.js 18+ (uses built-in fetch)
  2. Valyu API key from https://platform.valyu.ai ($10 free credits)

CRITICAL: Script Path Resolution

The scripts/search commands in this documentation are relative to this skill's installation directory.

Before running any command, locate the script using:

BIOMEDICAL_SCRIPT=$(find ~/.claude/plugins/cache -name "search" -path "*/biomedical-search/*/scripts/*" -type f 2>/dev/null | head -1)

Then use the full path for all commands:

$BIOMEDICAL_SCRIPT "CAR-T cell therapy" 20

API Key Setup Flow

When you run a search and receive "setup_required": true, follow this flow:

  1. Ask the user for their API key: "To search biomedical databases, I need your Valyu API key. Get one free ($10 credits) at https://platform.valyu.ai"

  2. Once the user provides the key, run:

    scripts/search setup <api-key>
    
  3. Retry the original search.

When to Use This Skill

  • Complete biomedical information gathering
  • Clinical research combined with basic science
  • Finding trials, literature, and official drug info together
  • Evidence-based medicine research
  • Disease understanding from multiple angles

Read the full file on GitHub · 215 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 9d ago First seen · 215 lines · 30 tokens per session scan B b91b7118e805

Subscribe to this mod's changes

biomedical-search is a skill published in the GitHub repository Zaoqu-Liu/ScienceClaw (60 stars, last pushed 5mo ago), licensed MIT. It adds 30 tokens to every session and 1,418 once invoked, about $0.0002 per session on Opus 5. A static security scan graded it B with 1 finding (reads agent configuration directories). It is 100% identical to biomedical-search, differing in 0 lines, and is treated as a copy.