MathModeling-skills: Skill for Claude Code

.claude/skills/related-paper-analyzer/SKILL.md

related-paper-analyzer is a skill for Claude Code from zhnnky329/MathModeling-skills. It costs 29 tokens per session (1,489 once invoked), scanned A, original, MIT.

A review step for papers and reports that you provide before choosing a mathematical modeling method. It extracts useful methods, assumptions, variables, validation ideas, and limitations from those original files.

In plain words
What is it for?
Use it to examine original papers stored in the required workspace folder and inform later method selection. It does not find papers online or write the final method recommendation.
Why use it?
It reduces the risk of choosing a model based on guesswork or copying a published approach without checking whether it fits your problem.

Skill for Claude Code

Written for Claude Code: installed under .claude/.

This is zhnnky329/MathModeling-skills's own configuration. It tells Claude Code how to work on MathModeling-skills itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything MathModeling-skills configures →

Reuse

Borrowing it

Nothing to install: this file belongs to zhnnky329/MathModeling-skills. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/zhnnky329/MathModeling-skills/main/.claude/skills/related-paper-analyzer/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/zhnnky329/MathModeling-skills

Made for: Claude Code.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for related-paper-analyzer

README.md
[![agentmods](https://agentmods.dev/badge/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer/github.svg)](https://agentmods.dev/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer)
Your own site
<a href="https://agentmods.dev/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer"><img src="https://agentmods.dev/badge/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer/github.svg" alt="Measured on agentmods" height="20"></a>

Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

agentmods 80×15 button for related-paper-analyzer

Your own site · 80×15
<a href="https://agentmods.dev/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer"><img src="https://agentmods.dev/badge/skills/zhnnky329/mathmodeling-skills/related-paper-analyzer.svg" alt="Reviewed on agentmods" width="80" height="20"></a>
Per session 29 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 1,489 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector warn 7 Sept 2026
SkillSpector: 1 finding, up to medium

These are SkillSpector’s own severities. On a checked sample its high-severity flags on skills were ~96% false positives — a documented command, a public API, a “never do X” rule — so we show them as a caution to read, not a verdict. Why →

  • medium Excessive Agency · line 115
    Skill enables autonomous high-impact decisions without human-in-the-loop verification. Critical operations (destructive commands, financial transactions, data deletion) should require explicit user confirmation.
    Fix: Add human-in-the-loop confirmation for destructive, irreversible, or high-impact operations. Never auto-execute commands that modify files, send data, or alter system state.
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00029 $0.01489
Opus 5 $0.00015 $0.00745
Sonnet 5 $0.00006 $0.00298
Haiku 4.5 $0.00003 $0.00149

Measured 12d ago against content hash 7cf4a52212eb, method: parsed. Prices are Anthropic first-party input rates as of 2026-09-12, from the pricing page.

Security

Grade A, and why

related-paper-analyzer scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 12d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/related-paper-analyzer/SKILL.md · 207 lines

How it starts

The opening of the file, as written. The whole thing — 207 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Purpose

Analyze user-provided papers and reports before final method selection.

This skill checks whether the user has placed original paper files under workspace/papers/, reads those originals, and extracts transferable method cues, assumptions, variables, validation ideas, and limitations for the current subquestions.

This skill does not fabricate references, browse for new papers, write the final method card, or copy a published model blindly.

When to use

Use this skill:

  • After problem-parser and problem-classifier have produced validated artifacts.
  • Before method-selector.
  • When the team wants to ground method selection in user-supplied literature rather than guessing from model names.
  • When original papers, reports, or extracted paper text are available under workspace/papers/.

Preconditions

The following should already exist or be provided:

  • A validated problem parse.
  • A validated problem classification artifact.
  • At least one original paper file under workspace/papers/.

If no paper originals are present under workspace/papers/, stop and remind the user to place them there before analysis begins.

Inputs

Use or request:

  • workspace/problem/problem-parser/problem_parse.json, if available.
  • workspace/problem/problem-classifier/problem_classification.json, if available.
  • Original paper files under workspace/papers/.
  • User notes about which papers matter most, if available.

Workflow

  1. Check workspace/papers/ first.

    • Look for user-supplied paper originals or extracted paper text.
    • Accept formats such as .pdf, .docx, .md, .txt, or clearly named extracted text files.
    • Ignore workspace/papers/related_paper_analysis.md if it already exists.
  2. Stop early if the paper folder is empty.

    • If no paper originals are found, tell the user to place the paper originals under workspace/papers/.
    • Do not fabricate literature summaries from memory.
  3. Inventory the available papers.

    • Record file name, apparent title if recoverable, likely language, and likely relevance.
    • Mark unreadable or weakly relevant files explicitly.

Read the full file on GitHub · 207 lines

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 12d ago First seen · 207 lines · 29 tokens per session scan A 7cf4a52212eb

Subscribe to this mod's changes

related-paper-analyzer is a skill published in the GitHub repository zhnnky329/MathModeling-skills (882 stars, last pushed 18d ago), licensed MIT. It adds 29 tokens to every session and 1,489 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

Related

Other skills, from other repositories

instrument-data-to-allotrope

Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full…

anthropics/knowledge-work-plugins · 123 tokens

matlab

Build, review, migrate, and safely plan MATLAB or GNU Octave numerical workflows, including arrays, tabular/time data, tests, projects, graphics, MAT files, and explicit Python interoperability.

K-Dense-AI/scientific-agent-skills · 42 tokens

exploratory-data-analysis

Perform bounded, local exploratory analysis of explicitly supported scientific files. Use for redacted CSV/TSV/JSON profiles; optional NumPy, HDF5, FASTA/FASTQ, and basic image metadata inspection; missingness/leakage audits; outlier and transformation sensitivity; and rigorous EDA report scaffolds. Other domain…

K-Dense-AI/scientific-agent-skills · 83 tokens

phylogenetics

Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.

K-Dense-AI/scientific-agent-skills · 68 tokens

research-engineer

An uncompromising Academic Research Engineer. Operates with absolute scientific rigor, objective criticism, and zero flair. Focuses on theoretical correctness, formal verification, and optimal implementation across any required technology.

davila7/claude-code-templates · 43 tokens

mapping-to-snomed

Maps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology server (the user's own Ontoserver, Snowstorm, or UMLS/UTS), never a bundled vocabulary. Use when the user wants to code findings, disorders, procedures, body structures, or substances to SNOMED CT, run an ECL…

maziyarpanahi/openmed · 205 tokens