Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx agentmods add skills/zlanqing/codex-claude-academic-skills/matplotlibnpx skills add zLanqing/codex-claude-academic-skills --skill matplotlibgit clone --depth 1 https://github.com/zLanqing/codex-claude-academic-skillsWhat it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5 | $0.00077 | $0.02953 |
| Opus 5 | $0.00039 | $0.01477 |
| Sonnet 5 | $0.00015 | $0.00591 |
| Haiku 4.5 | $0.00008 | $0.00295 |
Grade A, and why
matplotlib scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
Copies of this mod
2 near-identical copies found in the catalogue:
- matplotlib — 100% identical, 0 lines differ
- matplotlib — 100% identical, 0 lines differ
How it starts
The opening of the file, as written. The whole thing — 360 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Matplotlib
Overview
Matplotlib is Python's foundational visualization library for creating static, animated, and interactive plots. This skill provides guidance on using matplotlib effectively, covering both the pyplot interface (MATLAB-style) and the object-oriented API (Figure/Axes), along with best practices for creating publication-quality visualizations.
When to Use This Skill
This skill should be used when:
- Creating any type of plot or chart (line, scatter, bar, histogram, heatmap, contour, etc.)
- Generating scientific or statistical visualizations
- Customizing plot appearance (colors, styles, labels, legends)
- Creating multi-panel figures with subplots
- Exporting visualizations to various formats (PNG, PDF, SVG, etc.)
- Building interactive plots or animations
- Working with 3D visualizations
- Integrating plots into Jupyter notebooks or GUI applications
Core Concepts
The Matplotlib Hierarchy
Matplotlib uses a hierarchical structure of objects:
- Figure - The top-level container for all plot elements
- Axes - The actual plotting area where data is displayed (one Figure can contain multiple Axes)
- Artist - Everything visible on the figure (lines, text, ticks, etc.)
- Axis - The number line objects (x-axis, y-axis) that handle ticks and labels
Two Interfaces
1. pyplot Interface (Implicit, MATLAB-style)
import matplotlib.pyplot as plt
plt.plot([1, 2, 3, 4])
plt.ylabel('some numbers')
plt.show()
- Convenient for quick, simple plots
- Maintains state automatically
- Good for interactive work and simple scripts
2. Object-Oriented Interface (Explicit)
import matplotlib.pyplot as plt
fig, ax = plt.subplots()
ax.plot([1, 2, 3, 4])
ax.set_ylabel('some numbers')
plt.show()
- Recommended for most use cases
- More explicit control over figure and axes
- Better for complex figures with multiple subplots
- Easier to maintain and debug
Common Workflows
1. Basic Plot Creation
What ships with it
6 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- yesterday First seen · 360 lines · 77 tokens per session scan A 20aaffc4ca73
matplotlib is a skill published in the GitHub repository zLanqing/codex-claude-academic-skills (3,332 stars, last pushed 3mo ago), licensed MIT. It adds 77 tokens to every session and 2,953 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.
Other skills, from other repositories
experimental-design
Design experiments and studies BEFORE data is collected — choosing a design, randomizing, blocking, and laying out treatment combinations so results are interpretable. Use whenever someone is planning a study, asks how to assign subjects/samples to groups, mentions randomization, blocking, stratification, controls…
arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for…
flux-analyzer
Analyse FBA flux distributions to extract biological insights. Covers gene essentiality, phenotypic phase planes, flux sampling, pathway-level aggregation, secretion product prediction, and production of publication- quality figures.
ligandmpnn
Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN). Reach for this skill to redesign the residues lining a binding pocket around a bound small molecule or cofactor, to design metal-coordinating sites where the geometry must be…
happiness-skill
当用户问「怎么才能更幸福/为什么得到了还不满足/怎么减少焦虑」时调用。 核心理念: 幸福是缺憾感清空的默认状态, 是可训练的技能; 欲望是与自己的契约(得到前不快乐), 同时只留一个重大欲望; 活在当下。 不适用于: 临床抑郁等需要专业治疗的场景(本书方法不能替代医疗)。 Triggers: 幸福/不快乐/欲望/焦虑/知足/活在当下/happiness/desire/anxiety.
evo2
Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per-sequence likelihoods for variant effect scoring, (2) Embedding genomic windows for downstream classification, (3) Generating DNA conditioned on a prefix, (4) Scoring…