Official Bioclaw Skills (bioskills) Library for Bioinformatics and Omics Workflows
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
SPR and BLI assay planning, kinetic interpretation, and troubleshooting guidance. Use when: (1) Planning binding kinetics experiments, (2) Troubleshooting poor/no binding signal, (3) Interpreting kinetic data artifacts, (4) Choosing between SPR vs BLI platforms.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Access UniProt for protein sequence and annotation retrieval. Use this skill when: (1) Looking up protein sequences by accession, (2) Finding functional annotations, (3) Getting domain boundaries, (4) Finding homologs and variants, (5) Cross-referencing to PDB structures. For structure retrieval, use pdb. For sequence…
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for multiplexed imaging or IMC segmentation, phenotyping, and spatial summarization.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for untargeted or targeted metabolomics including preprocessing, normalization, annotation, statistics, and pathway mapping.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Mass spectrometry proteomics QC, quantification, comparative analysis, and export for DDA, DIA, and protein-level result tables.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Structure retrieval, confidence-aware AlphaFold DB usage, coordinate download, PAE and pLDDT interpretation, and structure-guided biological annotation.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for ligand-receptor communication inference in single-cell or spatial data with sender-receiver summaries and cautious interpretation.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Standard scRNA-seq preprocessing and clustering with Scanpy. Use for QC, normalization, HVG selection, PCA, neighbor graph construction, UMAP, Leiden clustering, and export of an analysis-ready AnnData object.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for spatial transcriptomics preprocessing, domain detection, deconvolution, neighborhood analysis, and publication-ready maps.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for pseudotime, lineage branching, and state-transition analysis in single-cell data.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for event-level and isoform-level splicing analysis with sashimi-ready outputs and splice QC.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Python-first workflow for bulk RNA-seq expression intake, normalization, sample QC, and downstream-ready matrices.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Bulk transcriptomics differential expression with count-aware modeling, design validation, contrast handling, thresholded exports, and publication-ready DE figures.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for ribosome profiling, P-site aware preprocessing, periodicity checks, ORF detection, and translation efficiency analysis.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for gene and transcript quantification from RNA-seq reads using alignment-based or alignment-free tools.
zongtingwei/Bioclaw_Skills_Hub
Skill Claude CodeCodex
Workflow for small RNA and miRNA preprocessing, quantification, differential analysis, and target-oriented interpretation.
At most 3 mods per repository are shown here, and a mod shipped inside a plugin is left to that plugin's page — the rest are on their repository pages: