cancer-genomics commands

zamushwani/biomedical-ai-skills

Command Claude Code

Spatial transcriptomics analysis: loading, spatial QC, spatially variable genes, deconvolution, domains. Use for Visium, Xenium, MERSCOPE, or CosMx data.

zamushwani/biomedical-ai-skills

Command Claude Code

Annotate and clinically interpret variants from a VCF. Use when the user has variant calls and wants functional annotation, ACMG classification, oncogenicity, or clinical tiers.

zamushwani/biomedical-ai-skills

Command Claude Code

Pathway enrichment on a ranked gene list (GSEA or ORA). Use when the user asks which pathways are enriched, wants GSEA/fgsea, or has DE results to interpret biologically.

aipoch/medical-research-skills

Command

Deep Q&A on a paper already analyzed. Actively records valuable insights to the note file during the discussion, without waiting for the user to prompt it.

aipoch/medical-research-skills

Command

Execute all steps without asking for user confirmation at intermediate stages. Report results at the end.

aipoch/medical-research-skills

Command

Synthesizes accumulated literature notes into a structured Research Foundation Document (RFD).