cancer-research commands

10 tagged cancer-research, measured the same way as everything else here.

Browse within: ai-skills 10bioinformatics 10cancer-genomics 10

analyze-spatial

01

zamushwani/biomedical-ai-skills

Command Claude Code

Spatial transcriptomics analysis: loading, spatial QC, spatially variable genes, deconvolution, domains. Use for Visium, Xenium, MERSCOPE, or CosMx data.

not rated 1 3d ago A 38 tokens original MIT

annotate-variants

02

zamushwani/biomedical-ai-skills

Command Claude Code

Annotate and clinically interpret variants from a VCF. Use when the user has variant calls and wants functional annotation, ACMG classification, oncogenicity, or clinical tiers.

not rated 1 3d ago A 35 tokens original MIT

run-gsea

03

zamushwani/biomedical-ai-skills

Command Claude Code

Pathway enrichment on a ranked gene list (GSEA or ORA). Use when the user asks which pathways are enriched, wants GSEA/fgsea, or has DE results to interpret biologically.

not rated 1 3d ago A 41 tokens original MIT

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