417 tagged Scientific, measured the same way as everything else here.
Browse within: bioinformatics 23genomics 9machine-learning 9ai-scientist 8cyanheads 7drug-discovery 7model-context-protocol 7LaTeX 5academic-writing 5ai-for-science 5chemistry 5claude-plugin 5codex-cli 5codex-skill 5
maxwell2732/paper-replicate-agent-demo
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Claude Code instructions for maxwell2732/paper-replicate-agent-demo, covering claude.md -- ukb empirical replication agent, core principles, folder structure, commands and run r replication script.
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Instructions for crazyhottommy/pyflow-ChIPseq, covering pyflow-chipseq: repository structure and overview, repository purpose, key features, publication and directory structure.
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Instructions for Netflix-Skunkworks/oci-agent, covering observational causal inference (oci) agent and rules.
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Instructions for psu-efd/pyHMT2D, covering claude.md, commands, install in editable mode (development), run all tests and run a specific test file.
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A set of instructions for an academic research toolkit, with commands for reading papers, generating ideas, planning experiments, writing proofs and papers, reviewing work, and analysing professor fit. It defaults to Traditional Chinese for explanations and uses English for some formal academic output.
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Instructions for DrugClaw/DrugClaw, covering drugclaw, tech stack, directory overview, project layout and key patterns.
Instructions file CodexOpenCode
Instructions for CliMA/ClimaAtmos.jl, covering climaatmos agent guide, ecosystem guidelines, repo-specific guidelines, local norms and self-correction.
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Instructions for CliMA/ClimaAtmos.jl, a project described as: GPU-capable global atmosphere model of the CliMA Earth System Model, designed for calibration with data assimilation and machine learning.
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Instructions for xingwudao/open-xquant, covering claude.md, project overview, project structure, bug fixing and cross-file sync.
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Claude Code instructions for htlin222/meta-pipe, a project described as: Claude Code-powered end-to-end meta-analysis automation: AI-assisted literature review, screening, extraction, analysis, and manuscript generation for systematic reviews and clinical evidence synthesis.
Instructions file CodexOpenCode
AGENTS.md instructions for genggng/hermes-arxiv-agent, covering agents, project purpose, core data flow, deployment modes and 1. local mode.
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Instructions for dreadnode/agent-lens, covering agentlens, project structure, running experiments, config format (yaml) and engines.
diegoscarabelli/garmin-health-data
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Instructions for diegoscarabelli/garmin-health-data, covering claude.md, readme.md, database schema architecture, schema documentation and formatting ddl files.
Instructions file CodexOpenCode
Instructions for nudt-sawlab/PiLoT, covering agents.md — pilot agent guide, what this repo does, repo layout, install (conda env: pilot) and feicuiwan ply renderer only.
Instructions file Gemini CLI
Instructions for wybert/earth-agent-chrome-ext, a project described as: Earth Agent is a Cursor-like AI agent for Google Earth Engine. It can be used right in your browser as a Chrome extension or through MCP server support. It helps you do anything related to Google Earth Engine automatically through chatting (write…
Instructions file CodexOpenCode ✓ vendor
AGENTS.md instructions for aws-samples/aws-hpc-recipes, covering aws hpc recipes, what this repository is, read this before you change anything, repository map and deep documentation.
Instructions file ✓ vendor
Claude Code instructions for aws-samples/aws-hpc-recipes, a project described as: Contains example recipes that demonstrate how to build HPC systems using AWS services and solutions.
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Claude Code instructions for plclub/hs-to-rocq, covering claude.md, project overview, build commands, ci commands and architecture.
Instructions file CodexOpenCode
Instructions for CliMA/Thermodynamics.jl, covering thermodynamics.jl agent guide, ecosystem guidelines, before you act: agent autonomy, repo-specific guidelines and architecture.
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Instructions for statsclaw/statsclaw, a project described as: A workflow framework for statistical package development.
Instructions file CodexOpenCode
Instructions for iLearn-Lab/ACL25-AdaReTaKe, covering agents.md — adaretake reproduction guide for coding agents, 0. one-line quickstart (tell the agent this), 1. repo layout, 2. environment setup and install exact versions from paper.
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Instructions for IlyaGusev/academia_mcp, covering claude.md, project overview, development commands, setup and create virtual environment and install dependencies.
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Instructions for DingyangLyu/MatClaw, covering matclaw, git branch & push strategy, about, quick context and key files.
Instructions file CodexOpenCode
Instructions for gokeshenzhen/TraceWeave, covering repository guidance, domain context and authorized scope, installation discipline, traceweave usage and lsf-only npi user setup.