Scientific instructions files

418 tagged Scientific, measured the same way as everything else here.

Browse within: bioinformatics 24genomics 10machine-learning 9ai-scientist 8cyanheads 7drug-discovery 7model-context-protocol 7LaTeX 5academic-writing 5ai-for-science 5chemistry 5claude-plugin 5codex-cli 5codex-skill 5

Hereon-InstituteMS/OASiS

Instructions file GitHub Copilot

Instructions for Hereon-InstituteMS/OASiS, covering oasis — project instructions, how to handle complex simulation tasks, developer mode: extending solvers, mandatory quality control and gate: no simulation without critic approval.

not rated 18 26d ago A 786 tokens original MIT

highs-mcp CLAUDE.md

99

wspringer/highs-mcp

Instructions file

Instructions for wspringer/highs-mcp, covering project overview, knope, feature example, add sparse matrix support and breaking change example.

not rated 18 1y ago A 395 tokens original MIT

erddap2mcp CLAUDE.md

100

robertdcurrier/erddap2mcp

Instructions file

Claude Code instructions for robertdcurrier/erddap2mcp, covering claude.md, 🌊 critical reference guide 🌊, project overview, 1. local mcp server (erddapymcpserver.py) and 2. remote mcp server (erddapremotemcpoauth.py).

not rated 18 10mo ago C 2,300 tokens

dqmc AGENTS.md

101

edwnh/dqmc

Instructions file CodexOpenCode

AGENTS.md instructions for edwnh/dqmc, covering agents.md, mission & boundaries, quickstart commands, environment setup and build.

not rated 18 4mo ago B 1,920 tokens original MIT

AlessandroCaforio/Academic-Writing

Instructions file

Instructions for AlessandroCaforio/Academic-Writing, covering project brain - thesis: automation & political ideology, memory protocol, github repository, project structure (updated 2026-02-16) and data sources.

not rated 17 5mo ago A 5,883 tokens original MIT

SutroYaro GEMINI.md

103

cybertronai/SutroYaro

Instructions file Gemini CLI

Instructions for cybertronai/SutroYaro, covering gemini.md - sutro group research workspace, project context, read these first, core concepts and current best methods.

not rated 16 3mo ago A 2,086 tokens original Unlicense

nickzren/biomed-agent

Instructions file CodexOpenCode

Instructions for nickzren/biomed-agent, covering agent guide - biomed-agent, current direction, role, research contract and safety.

not rated 15 3mo ago A 1,130 tokens original Apache-2.0

XBP-Europe/sagemath-mcp

Instructions file

Instructions for XBP-Europe/sagemath-mcp, covering claude.md, project, commands, linting and testing.

not rated 14 11d ago A 2,395 tokens original MIT

andikarachman/data-science-plugin

Instructions file

Claude Code instructions for andikarachman/data-science-plugin, covering claude.md, project overview, plugin structure, versioning & component count sync and invocation map.

not rated 14 6mo ago A 1,378 tokens

SHSharkar/MCP-Mathematics

Instructions file

Instructions for SHSharkar/MCP-Mathematics, covering claude.md, project overview, development commands, testing and run all tests (130 test cases).

not rated 13 10mo ago C 3,117 tokens original MIT

stac-mcp AGENTS.md

110

BnJam/stac-mcp

Instructions file CodexOpenCode

Instructions for BnJam/stac-mcp, covering architecture records (adrs and asrs) and gdal/rasterio compatibility notes.

not rated 13 27d ago A 2,629 tokens original MIT

yade-mcp AGENTS.md

111

yusong652/yade-mcp

Instructions file CodexOpenCode

Instructions for yusong652/yade-mcp, covering agents.md, project overview, build and test, branch strategy and release workflow.

not rated 13 6d ago A 673 tokens original MIT

James-Traina/compound-science

Instructions file

Instructions for James-Traina/compound-science, covering compound-science plugin, core workflow, skills (20), workflow (6) — core research loop and chain (2) — automated multi-step execution.

not rated 13 +1 5mo ago A 2,386 tokens original MIT

ariaxhan/kernel-claude

Instructions file CodexOpenCode

AGENTS.md instructions for ariaxhan/kernel-claude, a project described as: Claude Code learns from itself. Persistent memory, multi-agent orchestration, and a scientific experiment engine that proves which rules actually work.

not rated 12 changed today A 6,173 tokens original MIT

SciCrucible CLAUDE.md

114

Xinyang-Li666/SciCrucible

Instructions file

A project guide for SciCrucible, covering its scientific knowledge base, structure, commands, directories, and working principles.

not rated 12 1mo ago A 1,107 tokens GPL-3.0

koljaschoepe/scientific-writing

Instructions file

Instructions for koljaschoepe/scientific-writing, covering scientific writing framework, schnellstart, workflow, befehle and regeln für generierte texte.

not rated 11 18d ago A 1,163 tokens original MIT

statfin-mcp CLAUDE.md

116

markusl/statfin-mcp

Instructions file

Instructions for markusl/statfin-mcp, covering statfin mcp server, quick reference, development commands, project structure and mcp tools.

not rated 11 2mo ago A 802 tokens original MIT

dengxu11111/dual-ai-paper-coach

Instructions file

Instructions for dengxu11111/dual-ai-paper-coach, covering claude.md — your working rules in this project, project goal, architecture (v0.3), your role and priorities.

not rated 11 3mo ago A 1,975 tokens original MIT