Scientific instructions files

489 tagged Scientific, measured the same way as everything else here.

Browse within: bioinformatics 26genomics 11machine-learning 11model-context-protocol 11ai-scientist 7cyanheads 7drug-discovery 7Cheminformatics 6LaTeX 6academic-writing 6claude-plugin 6ai-for-science 5chemistry 5codex-cli 5

CliMA/SurfaceFluxes.jl

Instructions file CodexOpenCode

AGENTS.md instructions for CliMA/SurfaceFluxes.jl, covering surfacefluxes.jl agent guide, ecosystem guidelines, before you act: agent autonomy, repo-specific guidelines and architecture.

not rated 21 2d ago A 1,330 tokens original Apache-2.0

FloatSpec CLAUDE.md

123

Beneficial-AI-Foundation/FloatSpec

Instructions file

Instructions for Beneficial-AI-Foundation/FloatSpec, covering floatspec project overview, important: "keep going" context, general programming philosophy, project structure and development commands.

not rated 21 10d ago A 7,737 tokens original Apache-2.0

nickzren/opentargets-mcp

Instructions file CodexOpenCode

Instructions for nickzren/opentargets-mcp, covering agent guide — opentargets-mcp, what this server is, run locally (stdio), use this server for and triage hints.

not rated 19 3mo ago A 675 tokens original MIT

Hereon-InstituteMS/OASiS

Instructions file GitHub Copilot

Instructions for Hereon-InstituteMS/OASiS, covering oasis — project instructions, how to handle complex simulation tasks, developer mode: extending solvers, mandatory quality control and gate: no simulation without critic approval.

not rated 18 26d ago A 786 tokens original MIT

highs-mcp CLAUDE.md

128

wspringer/highs-mcp

Instructions file

Instructions for wspringer/highs-mcp, covering project overview, knope, feature example, add sparse matrix support and breaking change example.

not rated 18 1y ago A 395 tokens original MIT

erddap2mcp CLAUDE.md

129

robertdcurrier/erddap2mcp

Instructions file

Claude Code instructions for robertdcurrier/erddap2mcp, covering claude.md, 🌊 critical reference guide 🌊, project overview, 1. local mcp server (erddapymcpserver.py) and 2. remote mcp server (erddapremotemcpoauth.py).

not rated 18 10mo ago C 2,300 tokens

dqmc AGENTS.md

130

edwnh/dqmc

Instructions file CodexOpenCode

AGENTS.md instructions for edwnh/dqmc, covering agents.md, mission & boundaries, quickstart commands, environment setup and build.

not rated 18 4mo ago B 1,920 tokens original MIT

AlessandroCaforio/Academic-Writing

Instructions file

Instructions for AlessandroCaforio/Academic-Writing, covering project brain - thesis: automation & political ideology, memory protocol, github repository, project structure (updated 2026-02-16) and data sources.

not rated 17 5mo ago A 5,883 tokens original MIT

viznoir CLAUDE.md

132

kimimgo/viznoir

Instructions file

Claude Code instructions for kimimgo/viznoir, covering claude.md, viznoir, project info, development commands and install (editable with dev deps).

not rated 17 yesterday A 2,647 tokens original MIT

SutroYaro GEMINI.md

133

cybertronai/SutroYaro

Instructions file Gemini CLI

Instructions for cybertronai/SutroYaro, covering gemini.md - sutro group research workspace, project context, read these first, core concepts and current best methods.

not rated 16 3mo ago A 2,086 tokens original Unlicense

nickzren/biomed-agent

Instructions file CodexOpenCode

Instructions for nickzren/biomed-agent, covering agent guide - biomed-agent, current direction, role, research contract and safety.

not rated 15 3mo ago A 1,130 tokens original Apache-2.0

XBP-Europe/sagemath-mcp

Instructions file

Instructions for XBP-Europe/sagemath-mcp, covering claude.md, project, commands, linting and testing.

not rated 14 11d ago A 2,395 tokens original MIT

andikarachman/data-science-plugin

Instructions file

Claude Code instructions for andikarachman/data-science-plugin, covering claude.md, project overview, plugin structure, versioning & component count sync and invocation map.

not rated 14 6mo ago A 1,378 tokens

SHSharkar/MCP-Mathematics

Instructions file

Instructions for SHSharkar/MCP-Mathematics, covering claude.md, project overview, development commands, testing and run all tests (130 test cases).

not rated 13 10mo ago C 3,117 tokens original MIT

stac-mcp AGENTS.md

140

BnJam/stac-mcp

Instructions file CodexOpenCode

Instructions for BnJam/stac-mcp, covering architecture records (adrs and asrs) and gdal/rasterio compatibility notes.

not rated 13 28d ago A 2,629 tokens original MIT

yade-mcp AGENTS.md

141

yusong652/yade-mcp

Instructions file CodexOpenCode

Instructions for yusong652/yade-mcp, covering agents.md, project overview, build and test, branch strategy and release workflow.

not rated 13 7d ago A 673 tokens original MIT

James-Traina/compound-science

Instructions file

Instructions for James-Traina/compound-science, covering compound-science plugin, core workflow, skills (20), workflow (6) — core research loop and chain (2) — automated multi-step execution.

not rated 13 +1 5mo ago A 2,386 tokens original MIT

SciCrucible CLAUDE.md

143

Xinyang-Li666/SciCrucible

Instructions file

A project guide for SciCrucible, covering its scientific knowledge base, structure, commands, directories, and working principles.

not rated 12 1mo ago A 1,107 tokens GPL-3.0

koljaschoepe/scientific-writing

Instructions file

Instructions for koljaschoepe/scientific-writing, covering scientific writing framework, schnellstart, workflow, befehle and regeln für generierte texte.

not rated 11 18d ago A 1,163 tokens original MIT