Scientific MCP servers

gtex-server

217

MCP server Claude CodeCodexCursor +2

MCP server "gtex-server" as configured in Augmented-Nature/GTEx-MCP-Server. Runs locally from the gtex-server npm package.

not rated 3 8mo ago A tokens not measured

medical-mcp

218

ThrownLemon/medical-mcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, and RxNorm. Runs locally from the medical-mcp npm package.

not rated 3 1y ago A tokens not measured original MIT archived

usgs-water-mcp

219

pgiffy/usgs-water-mcp

MCP server Claude CodeCodexCursor +2

MCP server "usgs-water-mcp" as configured in pgiffy/usgs-water-mcp. Runs locally from the usgs-water-mcp Python package.

not rated 3 1y ago A tokens not measured

ncbi_gene_mcp_client

220

mohammadnajeeb/ncbi_gene_mcp_client

MCP server Claude CodeCodexCursor +2

MCP server "ncbigenemcpclient" as configured in mohammadnajeeb/ncbigenemcpclient. Runs locally from the ncbi_gene_mcp_client Python package.

not rated 3 1y ago A tokens not measured original MIT

scientific-calculator-mcp

221

thinkitpossible/CalcMCP

MCP server Claude CodeCodexCursor +2

MCP server "scientific-calculator-mcp" as configured in thinkitpossible/CalcMCP. Runs locally from the scientific-calculator-mcp Python package.

not rated 3 9mo ago A tokens not measured original MIT

biopython-mcp

222

kmaneesh/biopython-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server providing BioPython library capabilities for biological sequence analysis, alignment, database access, and structural bioinformatics. Runs locally from the biopython-mcp Python package.

not rated 3 7mo ago A tokens not measured original MIT

arxiv-mcp-server

223

freyzo/arxiv-deep-research

MCP server Claude CodeCodexCursor +2

A flexible arXiv search and analysis service with MCP protocol support. Runs locally from the arxiv-mcp-server Python package.

not rated 3 5mo ago A tokens not measured

ema-mcp-server

224

openpharma-org/ema-mcp

MCP server Claude CodeCodexCursor +2

MCP server "ema-mcp-server" as configured in openpharma-org/ema-mcp. Runs locally from the @openpharma-org/ema-mcp-server npm package.

not rated 3 7mo ago A tokens not measured original MIT

string-mcp

225

MCPmed/STRINGmcp

MCP server Claude CodeCodexCursor +2

STRING-DB API MCP Bridge - A comprehensive interface for interacting with the STRING database API. Runs locally from the string-mcp Python package.

not rated 3 1y ago A tokens not measured original BSD-3-Clause

arxiv-search-mcp

226

markmcd/arxiv-search-mcp

MCP server Claude CodeCodexCursor +2

Simple MCP server for searching arXiv. Runs locally from the arxiv-search-mcp Python package.

not rated 3 1y ago A tokens not measured original Apache-2.0

pynastran-mcp

227

Shaoqigit/pynastran-mcp

MCP server Claude CodeCodexCursor +2

MCP server "pynastran-mcp" as configured in Shaoqigit/pynastran-mcp. Runs locally from the pynastran-mcp Python package.

not rated 3 6mo ago A tokens not measured original MIT

root-mcp

228

MohamedElashri/root-mcp

MCP server Claude CodeCodexCursor +2

Production-grade MCP server for CERN ROOT file analysis. Runs locally from the root-mcp Python package.

not rated 3 3d ago A tokens not measured original MIT

mcp-genelab-local

229

sbl-sdsc/mcp-genelab

MCP server Claude CodeCodexCursor +2

One of 2 in claude_desktop_config.json

MCP server for querying Neo4j Knowledge Graphs with custom tools for quering GeneLab. Runs locally from the mcp-genelab Python package. Needs 5 environment variables to run.

not rated 3 23d ago A tokens not measured original BSD-3-Clause

z3-solver-mcp-server

230

dsouflis/z3-solver-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "z3-solver-mcp-server" as configured in dsouflis/z3-solver-mcp-server. Runs locally from the z3-solver-mcp-server Python package.

not rated 3 1y ago A tokens not measured

mcap-mcp-server

231

turkenberg/mcap_mcp_server

MCP server Claude CodeCodexCursor +2

A generic SQL query interface for MCAP robotics data via the Model Context Protocol. Runs locally from the mcap-mcp-server Python package.

not rated 3 6mo ago A tokens not measured GPL-3.0

chimerax

232

mahynotch/chimerax-mcp

MCP server Claude CodeCodexCursor +2

MCP server "chimerax" as configured in mahynotch/chimerax-mcp. Runs chimerax_mcp with python.

not rated 3 5mo ago A tokens not measured original MIT

clinicaltrials-mcp

233

agents100x/clinicaltrials-mcp

MCP server Claude CodeCodexCursor +2

Conversational access to ClinicalTrials.gov — an MCP server for pharma analysts, CRO teams, and health-tech builders. Runs locally from the clinicaltrials-mcp Python package.

not rated 3 4mo ago A tokens not measured original MIT

protein_structure

234

soffelcopter/protein_structure_MCP_server

MCP server Claude CodeCodexCursor +2

MCP server "proteinstructure" as configured in soffelcopter/proteinstructureMCPserver. Runs locally from the protein_structure Python package.

not rated 3 1y ago A tokens not measured original MIT

mcp

235

Sage-Bionetworks/synapse-mcp

MCP server Claude CodeCodexCursor +2

Sage Bionetworks' Synapse server: lets the agent find and read datasets, files and projects on the Synapse research data platform. Remote server at mcp.synapse.org.