Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

math-mcp

289

andylbrummer/math-mcp

MCP server Claude CodeCodexCursor +2

One of 4 in server.json

MCP server for symbolic algebra and GPU-accelerated numerical computing. Runs locally from the scicomp-math-mcp Python package.

not rated 2 5mo ago A tokens not measured original MIT

astrodynamics-mcp

290

astro-tools/astrodynamics-mcp

MCP server Claude CodeCodexCursor +2

MCP server "astrodynamics-mcp" as configured in astro-tools/astrodynamics-mcp. Runs locally from the astrodynamics-mcp[gmat] Python package.

not rated 2 4mo ago A tokens not measured original MIT

scholar-mcp

291

pvliesdonk/scholar-mcp

MCP server Claude CodeCodexCursor +2

FastMCP server for scholarly papers, patents, books and standards with docling PDF conversion. Runs locally from the pvliesdonk-scholar-mcp Python package. Needs 24 environment variables to run.

not rated 2 changed 1mo ago A Socket: warn tokens not measured original MIT

tabedata-mcp

292

mrslbt/tabedata-mcp

MCP server Claude CodeCodexCursor +2

Bilingual JP/EN Japanese food nutrition for AI: 460 sourced konbini, chain & brand items. Runs locally from the tabedata-mcp npm package.

not rated 2 2mo ago A tokens not measured original MIT

biolit

293

rachadele/biolit

MCP server Claude CodeCodexCursor +2

LLM-assisted biomedical literature screening and structured extraction for PubMed and GEO. Runs locally from the biolit Python package. Needs 6 environment variables to run.

not rated 2 1mo ago A tokens not measured

pubmed-evidence

294

Tianyu-Qu/mcp-pubmed-evidence

MCP server Claude CodeCodexCursor +2

MCP server "pubmed-evidence" as configured in Tianyu-Qu/mcp-pubmed-evidence. Runs mcp_pubmed_evidence.server with python. Needs 1 environment variable to run.

not rated 2 3mo ago A tokens not measured original MIT

nmdc-mcp

295

microbiomedata/nmdc-mcp

MCP server Claude CodeCodexCursor +2

FastMCP-based tool for writing prompts against data in the NMDC (National Microbiome Data Collaborative) database. Runs locally from the nmdc-mcp Python package.

not rated 2 26d ago A tokens not measured

nasa-apod-mcp

296

liuwanglei-tal/nasa-mcp

MCP server Claude CodeCodexCursor +2

NASA APOD MCP Service for Cursor IDE. Runs locally from the nasa-apod-mcp npm package.

not rated 2 1y ago A tokens not measured original MIT

weatherapi-mcp

297

swonixs/weatherapi-mcp

MCP server Claude CodeCodexCursor +2

WeatherAPI MCP sunucusu - Hava durumu ve hava kalitesi verileri için MCP aracı. Runs locally from the @swonixs/weatherapi-mcp npm package.

not rated 2 1y ago A tokens not measured

viper

298

ryansherby/ViperMCP

MCP server Claude CodeCodexCursor +2

Simple VTK based visualization software. Runs locally from the viper Python package.

not rated 2 1y ago A tokens not measured

arxiv-mcp-server

299

wr-web/APR

MCP server Claude CodeCodexCursor +2

A flexible arXiv search and analysis service with MCP protocol support. Runs locally from the arxiv-mcp-server Python package.

not rated 2 1y ago A tokens not measured copy · 100% Apache-2.0

uniprot-mcp

300

josefdc/Uniprot-MCP

MCP server Claude CodeCodexCursor +2

Model Context Protocol server that surfaces UniProtKB data as MCP resources, tools, and prompts. Runs locally from the uniprot-mcp Python package.

not rated 2 7mo ago A tokens not measured original MIT

chemmcp

301

cassiusoat/ChemMCP_lite

MCP server Claude CodeCodexCursor +2

MCP server "chemmcp" as configured in cassiusoat/ChemMCPlite. Runs locally from the chemmcp Python package.

not rated 2 1y ago A tokens not measured copy · 100% Apache-2.0

evo2_mcp

302

not-a-feature/evo2-mcp

MCP server Claude CodeCodexCursor +2

MCP server for generating, scoring and embedding genomic sequences using Evo 2. Runs locally from the evo2_mcp Python package.

not rated 2 6mo ago A tokens not measured LGPL-3.0

pubmed_mcp_server2

303

masa061580/pubmed_mcp_server2

MCP server Claude CodeCodexCursor +2

Local stdio MCP server for PubMed with 10 tools: search, fetch, fetchbatch, getfulltext, count, findsimilararticles, exporttoris, getcitationcounts, convertids, batchprocess. Runs locally from the pubmed_mcp_server2 npm package.

not rated 2 5mo ago A tokens not measured original MIT

snotel-mcp-server

304

jymmyt/snotel-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "snotel-mcp-server" as configured in jymmyt/snotel-mcp-server. Runs locally from the snotel-mcp-server Python package.

not rated 2 1y ago A tokens not measured

infercnv-mcp

305

scmcphub/infercnv-mcp

MCP server Claude CodeCodexCursor +2

Natural language interface for CNV inference from scRNA-Seq data with infercnvpy through MCP. Runs locally from the infercnv-mcp Python package.

not rated 2 1y ago A tokens not measured

paperqa-mcp-server

306

menyoung/paperqa-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server exposing PaperQA2 for deep synthesis across scientific papers. Runs locally from the paperqa-mcp-server Python package.

not rated 2 7mo ago A tokens not measured original MIT

sym-mcp

307

Eis4TY/Sym-MCP

MCP server Claude CodeCodexCursor +2

SymPy sandbox MCP server based on FastMCP. Runs locally from the sym-mcp Python package.

not rated 2 4mo ago A tokens not measured original MIT

mcp-nec2-antenna

308

RFingAdam/mcp-nec2-antenna

MCP server Claude CodeCodexCursor +2

MCP server "mcp-nec2-antenna" as configured in RFingAdam/mcp-nec2-antenna. Runs locally from the mcp-nec2-antenna Python package.

not rated 2 3d ago A tokens not measured AGPL-3.0

artl-mcp

309

contextualizer-ai/artl-mcp

MCP server Claude CodeCodexCursor +2

PydanticAI and MCP approaches for getting textual representations of scientific literature from PMIDs, DOIs, etc. Runs locally from the artl-mcp Python package.

not rated 2 11mo ago A tokens not measured original MIT archived

protocol-mcp

310

biocontext-ai/protocol-mcp

MCP server Claude CodeCodexCursor +2

MCP that connects to wetlab protocol resources, including protocols.io. Runs locally from the protocol-mcp Python package.

not rated 2 8mo ago A tokens not measured original Apache-2.0

arxiv-mcp-server

311

Sulcate-whipcord611/arxiv-reader-mcp

MCP server Claude CodeCodexCursor +2

A flexible arXiv search and analysis service with MCP protocol support. Runs locally from the arxiv-mcp-server Python package.

not rated 2 13d ago A tokens not measured copy · 100% MIT

papermcp

312

telagod/papermcp

MCP server Claude CodeCodexCursor +2

MCP server for searching and accessing academic papers from 23+ sources. Runs locally from the @telagod/papermcp npm package.

not rated 2 11mo ago A tokens not measured original MIT

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