Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

pymol-cursor-mcp

433

truong128/pymol-cursor-mcp

MCP server Claude CodeCodexCursor +2

MCP server "pymol-cursor-mcp" as configured in truong128/pymol-cursor-mcp. Runs locally from the pymol-cursor-mcp Python package.

not rated 1 5mo ago A tokens not measured

openbiomcp

434

JesKwek/OpenBioMCP

MCP server Claude CodeCodexCursor +2

BioOpenMCP: Model Context Protocol tools and CLI for bioinformatics workflows. Runs locally from the openbiomcp Python package.

not rated 1 12mo ago A tokens not measured

simulink-mcp

435

wya5217799/simulink-mcp

MCP server Claude CodeCodexCursor +2

MCP server "simulink-mcp" as configured in wya5217799/simulink-mcp. Runs locally from the simulink-mcp Python package.

not rated 1 5mo ago A tokens not measured

ebony-enriching

436

ParkviewLab/ebony-enriching

MCP server Claude CodeCodexCursor +2

MCP server: an MCP lab notebook. Runs locally from the ebony-enriching Python package.

not rated 1 24d ago A tokens not measured original Apache-2.0

gwas-bioinformatics

437

muslus/gwas-mcp

MCP server Claude CodeCodexCursor +2

MCP server "gwas-bioinformatics" as configured in muslus/gwas-mcp. Runs gwas_mcp.server with python. Needs 1 environment variable to run.

not rated 1 8mo ago A tokens not measured original MIT

qgis-mcp

438

fani-ko/qgis_mcp

MCP server Claude CodeCodexCursor +2

MCP server "qgis-mcp" as configured in fani-ko/qgismcp. Runs locally from the qgis-mcp Python package.

not rated 1 1y ago A tokens not measured

z3smt-mcp

439

NewJerseyStyle/z3smt-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Z3/SMT solver - enables constraint solving and logical reasoning. Runs locally from the z3smt-mcp Python package.

not rated 1 9mo ago A tokens not measured original MIT

ipykernel-mcp

440

0x0L/ipykernel-mcp

MCP server Claude CodeCodexCursor +2

MCP server "ipykernel-mcp" as configured in 0x0L/ipykernel-mcp. Runs locally from the ipykernel-mcp Python package.

not rated 1 1mo ago A tokens not measured original MIT

academic-editor

441

drquandary/mcp-academic-editor

MCP server Claude CodeCodexCursor +2

MCP server "academic-editor" as configured in drquandary/mcp-academic-editor. Runs /path/to/mcp-academic-editor/server.py with python3. Needs 1 environment variable to run.

not rated 1 1y ago A tokens not measured original MIT

agda-mcp-server

442

InvariantHoldings/agda-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server for interactive Agda proof development — type-checking, goal inspection, case splitting, proof search, and more via the Model Context Protocol. Runs locally from the agda-mcp-server npm package.

not rated 1 1mo ago A tokens not measured

wetlab-mcp

443

muslus/wetlab-mcp

MCP server Claude CodeCodexCursor +2

A professional FastMCP server for in silico molecular biology and assay design. Runs locally from the wetlab-mcp Python package.

not rated 1 6mo ago A tokens not measured original MIT

erddap-mcp-demo

444

srstsavage/erddap-mcp-demo

MCP server Claude CodeCodexCursor +2

MCP server "erddap-mcp-demo" as configured in srstsavage/erddap-mcp-demo. Runs locally from the erddap-mcp-demo Python package.

not rated 1 1y ago A tokens not measured

junxiangyang0707-hash/arc-agi-3-world-model-lab

MCP server Claude CodeCodexCursor +2

MCP server "arc-agi-3-world-model-lab" as configured in junxiangyang0707-hash/arc-agi-3-world-model-lab. Runs locally from the arc-agi-3-world-model-lab Python package.

not rated 1 2mo ago A tokens not measured original Apache-2.0

retrograde-mcp

446

Griboedow/Retrograde-MCP

MCP server Claude CodeCodexCursor +2

MCP server: real planetary retrograde detection + NOAA space weather for CI/CD pipelines. Runs locally from the retrograde-mcp Python package.

not rated 1 6mo ago A tokens not measured original CC0-1.0

mcp-kaggle-tool

447

MikeyBeez/mcp-kaggle-tool

MCP server Claude CodeCodexCursor +2

MCP server "mcp-kaggle-tool" as configured in MikeyBeez/mcp-kaggle-tool. Runs locally from the mcp-kaggle-tool npm package.

not rated 1 9mo ago A tokens not measured

engram

448

TushaeBXN/engram

MCP server Claude CodeCodexCursor +2

The AI memory layer that never forgets. Runs locally from the engram-chateau Python package.

not rated 1 changed 4d ago A Socket: warn tokens not measured original MIT

arxiv-sync-mcp-server

449

marfago/arxiv-sync-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "arxiv-sync-mcp-server" as configured in marfago/arxiv-sync-mcp-server. Runs locally from the arxiv-sync-mcp-server Python package.

not rated 1 3mo ago A tokens not measured original Apache-2.0

simple-dicom-mcp

450

ThalesMMS/simple-dicom-mcp

MCP server Claude CodeCodexCursor +2

MCP server "simple-dicom-mcp" as configured in ThalesMMS/simple-dicom-mcp. Runs locally from the simple-dicom-mcp Python package.

not rated 1 4mo ago A tokens not measured original MIT

mcp-beaker

451

faizbawa/mcp-beaker

MCP server Claude CodeCodexCursor +2

MCP server for Beaker lab automation — system provisioning, job management, distro discovery, and failure diagnosis. Runs locally from the mcp-beaker Python package.

not rated 1 2mo ago A tokens not measured original MIT

awesome_well_mcp

452

elf004-star/elf004GH_vault_awesome_well_structure

MCP server Claude CodeCodexCursor +2

A local MCP server that generates well-structure diagrams from well data. It is based on a Python package and uses the provided well information to create the diagram.

not rated 1 6mo ago A tokens not measured original MIT

comsol-mcp

453

Zhangyoupeng1996/Codex_MCP_Comsol

MCP server Claude CodeCodexCursor +2

MCP server "comsol-mcp" as configured in Zhangyoupeng1996/CodexMCPComsol. Runs locally from the comsol-mcp Python package.

not rated 1 4mo ago A tokens not measured original MIT

anylogic-mcp-server

454

umbaman/anylogicPLE-mcp

MCP server Claude CodeCodexCursor +2

MCP server "anylogic-mcp-server" as configured in umbaman/anylogicPLE-mcp. Runs locally from the anylogic-mcp-server Python package.

not rated 1 +1 5mo ago A tokens not measured original MIT

weather

455

namto908/MCP_server

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 1 1y ago A tokens not measured

cdisc-library

456

whereayan/cdisc-library-mcp

MCP server Claude CodeCodexCursor +2

MCP Server for CDISC Library API - Clinical Data Standards Access. Runs locally from the cdisc-library-mcp Python package. Needs 1 environment variable to run.

not rated 1 2d ago A tokens not measured original MIT