Scientific MCP servers

1,370 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

alphafold

529

pipeworx-io/mcp-alphafold

MCP server Claude CodeCodexCursor +2

AlphaFold DB MCP — predicted protein structures. Remote server at gateway.pipeworx.io.

not rated 1 3d ago A tokens not measured copy · 75% MIT

itis

530

pipeworx-io/mcp-itis

MCP server Claude CodeCodexCursor +2

ITIS (Integrated Taxonomic Information System) MCP. Remote server at gateway.pipeworx.io.

not rated 1 29d ago A tokens not measured original MIT

opentopography

531

pipeworx-io/mcp-opentopography

MCP server Claude CodeCodexCursor +2

MCP server "opentopography", hosted remotely at gateway.pipeworx.io, as configured in pipeworx-io/mcp-opentopography.

not rated 1 29d ago A tokens not measured original MIT

vmd-hydrate-mcp

532

wjgoarxiv/vmd-hydrate-mcp

MCP server Claude CodeCodexCursor +2

An MCP server that drives VMD for GROMACS/LAMMPS trajectory analysis, scripted rendering, and clathrate-hydrate cage science (H-bond networks, F3/F4 order parameters). Runs locally from the vmd-hydrate-mcp Python package.

not rated 1 3mo ago A tokens not measured original MIT

math-svg-mcp

533

wspringer/math-svg-mcp

MCP server Claude CodeCodexCursor +2

Convert LaTeX math expressions to crisp, scalable SVG images. Runs locally from the math-svg-mcp npm package.

not rated 1 8mo ago A tokens not measured

knows-mcp-server

534

PancrePal-xiaoyibao/MCP-KnowS-AI

MCP server Claude CodeCodexCursor +2

A local Model Context Protocol (MCP) server for KnowS, a platform for searching and analysing medical evidence.

not rated 1 +1 5mo ago A tokens not measured

unicode-puzzles-mcp

535

vetcoders/unicode-puzzles-mcp

MCP server Claude CodeCodexCursor +2

MCP server for quantum steganography puzzles using Unicode. Runs locally from the unicode-puzzles-mcp npm package.

not rated 1 3mo ago A tokens not measured original MIT

scm

536

Mavis2103/skill-context-manager

MCP server Claude CodeCodexCursor +2

Gui for EPSC model and inverse analysis. Runs locally from the scm Python package.

not rated 1 3mo ago A tokens not measured original MIT

bvbrc

537

soham-shukla/mcp-bvbrc

MCP server Claude CodeCodexCursor +2

MCP server "bvbrc" as configured in soham-shukla/mcp-bvbrc. Runs /path/to/bvbrc.py with python. Needs 1 environment variable to run.

not rated 1 8mo ago A tokens not measured

ols-mcp

538

thoraxe/ols-mcp

MCP server Claude CodeCodexCursor +2

MCP for retrieving things from the Ontology Lookup Service. Runs locally from the ols-mcp Python package.

not rated 1 11mo ago A tokens not measured

fdmnes-mcp

539

Joint-Photon-Sciences-Institute/fdmnes-mcp

MCP server Claude CodeCodexCursor +2

MCP server wrapping FDMNES (X-ray spectroscopy ab-initio code) for natural-language driven workflows in Claude Code, Claude Desktop, and other MCP clients. Runs locally from the fdmnes-mcp Python package.

not rated 1 5mo ago A tokens not measured original BSD-3-Clause

paper-search

540

its-antony/paper-search

MCP server Claude CodeCodexCursor +2

Scientific paper search and ranking across OpenAlex, Semantic Scholar, and Unpaywall. Runs locally from the paper-search Python package.

not rated 1 5mo ago A tokens not measured original MIT

academic-figures-mcp

541

u9401066/academic-figures-mcp

MCP server Claude CodeCodexCursor +2

Academic figure agent harness for multi-step planning, generation, and evaluation through MCP. Runs locally from the academic-figures-mcp Python package.

not rated 1 5mo ago A tokens not measured original Apache-2.0

hysys-mcp

542

baojunjiang1711-lang/AspenHYSYS-MCP-Server-backup

MCP server Claude CodeCodexCursor +2

MCP server "hysys-mcp" as configured in baojunjiang1711-lang/AspenHYSYS-MCP-Server-backup. Runs locally from the hysys-mcp Python package.

not rated 1 2mo ago A tokens not measured original MIT

pollux

543

Wsyjq/pollux

MCP server Claude CodeCodexCursor +2

A JAX framework for data-driven latent variable models, with models for stellar spectroscopy. Runs locally from the pollux Python package.

not rated 1 2mo ago A tokens not measured original MIT

clinical-trials-mcp

544

brown-tech-info/Clinical-Trials-Gov-MCP

MCP server Claude CodeCodexCursor +2

MCP server "clinical-trials-mcp" as configured in brown-tech-info/Clinical-Trials-Gov-MCP. Runs locally from the clinical-trials-mcp Python package.

not rated 1 1y ago A tokens not measured

infoclimat-mcp

545

cmer81/infoclimat-mcp

MCP server Claude CodeCodexCursor +2

MCP server "infoclimat-mcp" as configured in cmer81/infoclimat-mcp. Runs locally from the infoclimat-mcp Python package.

not rated 1 7mo ago A tokens not measured

canopy

546

kruslim/canopy

MCP server Claude CodeCodexCursor +2

Python Client for the Canopy Simulation API. Runs locally from the canopy Python package.

not rated 1 3mo ago A tokens not measured

lumerical-mcp

547

zxqcreations/Lumerical_MCP_Skill

MCP server Claude CodeCodexCursor +2

MCP server "lumerical-mcp" as configured in zxqcreations/LumericalMCPSkill. Runs locally from the lumerical-mcp Python package.

not rated 1 3mo ago A tokens not measured

envi-classic

548

xuedai-mayi/envi-classic-remote-sensing

MCP server Claude CodeCodexCursor +2

MCP server "envi-classic" as configured in xuedai-mayi/envi-classic-remote-sensing. Launched with powershell.exe -NoLogo -NoProfile -NonInteractive -ExecutionPolicy Bypass -File .

not rated 0 2mo ago A tokens not measured original MIT

scigantic-mcp

549

Scigantic/scigantic-mcp

MCP server Claude CodeCodexCursor +2

MCP server for the Scigantic catalog of public scientific data archives, with LLM-ready schema cards. Runs locally from the scigantic-mcp Python package.

not rated 1 1mo ago A tokens not measured MIT-0

manim-web-mcp

550

1Cyrvox/manim-mcpweb

MCP server Claude CodeCodexCursor +2

AI-driven manim animation engine — MCP protocol, real-time browser preview, session persistence, bundled optimized manim. Runs locally from the manim-web-mcp Python package.

not rated 1 2mo ago A tokens not measured

openbio-comfy-mcp

551

Open-Bio/openbio-comfy-mcp

MCP server Claude CodeCodexCursor +2

MCP server "openbio-comfy-mcp" as configured in Open-Bio/openbio-comfy-mcp. Runs locally from the openbio-comfy-mcp npm package.

not rated 1 1mo ago A tokens not measured original MIT

hydrata-mcp-server

552

Hydrata/hydrata-mcp-server

MCP server Claude CodeCodexCursor +2

Run ANUGA flood simulations, track progress, and retrieve results on Hydrata Cloud. Remote server at hydrata.com.

not rated 1 3d ago A tokens not measured original MIT