Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

lazarus

49

chrishayuk/chuk-mcp-lazarus

MCP server Claude CodeCodexCursor +2

Mechanistic interpretability MCP server wrapping chuk-lazarus. Runs locally from the chuk-mcp-lazarus Python package.

not rated 21 yesterday A tokens not measured

lean-lsp-mcp

50

project-numina/lean-lsp-mcp

MCP server Claude CodeCodexCursor +2

Lean Theorem Prover MCP. Runs locally from the lean-lsp-mcp Python package.

not rated 21 7mo ago A tokens not measured original MIT

jaxonomy

51

machinavitalis/jaxonomy

MCP server Claude CodeCodexCursor +2

JAX-native simulation engine for hybrid dynamical systems: block-diagram modeling, ODE/DAE solvers, events, acausal physics, and end-to-end autodiff. Runs locally from the jaxonomy Python package.

not rated 21 2mo ago A tokens not measured original MIT

PhysiCell

52

marcorusc/mcp-biomodelling-servers

MCP server Claude CodeCodexCursor +2

One of 3 in server.json

MCP servers for NeKo signalling-network construction, MaBoSS Boolean simulation, PhysiCell configuration, and BioMASS ODE construction. Runs locally from the mcp-biomodelling-servers Python package.

not rated 20 +1 2d ago A tokens not measured GPL-3.0

stac-mcp

53

BnJam/stac-mcp

MCP server Claude CodeCodexCursor +2

An MCP Server for STAC requests. Runs locally from the stac-mcp Python package.

not rated 20 yesterday A tokens not measured original MIT

opentargets

54

nickzren/opentargets-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Open Targets Platform biomedical data access. Runs locally from the opentargets-mcp Python package.

not rated 19 15d ago A tokens not measured original MIT

rosetta-mcp-server

55

Arielbs/rosetta-mcp-server

MCP server Claude CodeCodexCursor +2

Rosetta/PyRosetta protein modeling and Biotite translation for computational biology. Runs locally from the rosetta-mcp-server npm package. Needs 3 environment variables to run.

not rated 19 6mo ago A tokens not measured

BerkKilicoglu/google-health-fitbit-mcp

MCP server Claude CodeCodexCursor +2

Privacy-first Google Health API MCP server for health, sleep, activity and HR agents. Runs locally from the google-health-fitbit-mcp npm package. Needs 8 environment variables to run.

not rated 19 2mo ago A tokens not measured original MIT

codersag/mechanical-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol (MCP) server for Ansys Mechanical through PyMechanical. Runs locally from the ansys-mechanical-mcp Python package.

not rated 19 yesterday A tokens not measured original Apache-2.0

kisti-mcp

58

ansua79/kisti-mcp

MCP server Claude CodeCodexCursor +2

KISTI-MCP Server - MCP server for KISTI OpenAPI (ScienceON, NTIS, DataON). Runs locally from the kisti-mcp Python package.

not rated 19 +1 3mo ago A tokens not measured

plantontology

59

AlexAI-MCP/PlantOntology

MCP server Claude CodeCodexCursor +2

MCP server "plantontology" as configured in AlexAI-MCP/PlantOntology. Runs locally from the plantontology Python package.

not rated 18 6mo ago A tokens not measured

shibuiwilliam/mcp-server-scikit-learn

MCP server Claude CodeCodexCursor +2

MCP server "mcp-server-scikit-learn" as configured in shibuiwilliam/mcp-server-scikit-learn. Runs locally from the mcp-server-scikit-learn Python package.

not rated 18 1y ago A tokens not measured original MIT

faostat-mcp

61

berba-q/faostat-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing the full FAOSTAT API to AI assistants. Runs locally from the faostat-mcp Python package. Needs 3 environment variables to run.

not rated 18 22d ago A tokens not measured original MIT

sagemath

62

XBP-Europe/sagemath-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server that provides stateful SageMath computations. Runs locally from the sagemath-mcp Python package.

not rated 18 today A tokens not measured original MIT

geo-mcp

63

MCPmed/GEOmcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API. Runs locally from the geo-mcp Python package.

not rated 18 6mo ago A tokens not measured original BSD-3-Clause

highs-mcp

64

wspringer/highs-mcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server that provides linear programming (LP) and mixed-integer programming (MIP) optimization capabilities using the HiGHS solver. Runs locally from the highs-mcp npm package.

not rated 17 1y ago A tokens not measured original MIT

stats-compass

65

oogunbiyi21/stats-compass-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing stats-compass-core tools to LLMs like ChatGPT, Claude, and Gemini. Runs locally from the stats-compass-mcp Python package.

not rated 17 yesterday A tokens not measured original MIT

article-mcp

66

gqy20/article-mcp

MCP server Claude CodeCodexCursor +2

A local search server for academic articles, using sources such as Europe PMC and arXiv. It is configured to run through the article-mcp Python package.

not rated 17 +1 9mo ago A tokens not measured original MIT

ronantakizawa/gis-dataconversion-mcp

MCP server Claude CodeCodexCursor +2

An MCP server for converting GIS data in different formats. Runs locally from the gis-dataconversion-mcp npm package.

not rated 17 1y ago A tokens not measured original MIT

Augmented-Nature/NCBI-Datasets-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "ncbi-datasets-server" as configured in Augmented-Nature/NCBI-Datasets-MCP-Server. Runs locally from the ncbi-datasets-server npm package.

not rated 16 10mo ago A tokens not measured

scmcp

69

scmcphub/scmcp

MCP server Claude CodeCodexCursor +2

An MCP server for scRNA-Seq analysis with natural language! Runs locally from the scmcp Python package.

not rated 16 1y ago A tokens not measured original BSD-3-Clause

mcpymol

70

chemrich/MCPymol

MCP server Claude CodeCodexCursor +2

A conversational MCP server interface for PyMOL protein visualization. Runs locally from the mcpymol Python package.

not rated 16 11d ago A tokens not measured original MIT

aringadre76/mcp-for-research

MCP server Claude CodeCodexCursor +2

Consolidated MCP server for scholarly research across PubMed, ArXiv, Google Scholar, and JSTOR (5 powerful tools instead of 24). Runs locally from the scholarly-research-mcp npm package.

not rated 16 5mo ago A tokens not measured original MIT

samsung-health-mcp

72

davidmosiah/samsung-health-mcp

MCP server Claude CodeCodexCursor +2

Unofficial local-first MCP server for Samsung Health personal-data CSV/ZIP exports. Runs locally from the samsung-health-mcp-unofficial npm package. Needs 4 environment variables to run.

not rated 16 +1 16d ago A tokens not measured original MIT