agentmods.dev

Scientific MCP servers

1,351 tagged Scientific, measured the same way as everything else here.

Browse within: model-context-protocol 288pipeworx 189bioinformatics 56ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15fastapi 13noaa 13health 12multiomics 12

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google-health-fitbit-mcp

49

BerkKilicoglu/google-health-fitbit-mcp

MCP server Claude CodeCodexCursor +2

Privacy-first Google Health API MCP server for health, sleep, activity and HR agents. Runs locally from the google-health-fitbit-mcp npm package. Needs 8 environment variables to run.

not rated 16 1mo ago A tokens not measured original MIT

article-mcp

50

gqy20/article-mcp

MCP server Claude CodeCodexCursor +2

A local search server for academic articles, using sources such as Europe PMC and arXiv. It is configured to run through the article-mcp Python package.

not rated 16 8mo ago A tokens not measured original MIT

ncbi-datasets-server

51

Augmented-Nature/NCBI-Datasets-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "ncbi-datasets-server" as configured in Augmented-Nature/NCBI-Datasets-MCP-Server. Runs locally from the ncbi-datasets-server npm package.

not rated 16 8mo ago A tokens not measured

scmcp

52

scmcphub/scmcp

MCP server Claude CodeCodexCursor +2

An MCP server for scRNA-Seq analysis with natural language! Runs locally from the scmcp Python package.

not rated 16 1y ago A tokens not measured original BSD-3-Clause

gis-dataconversion-mcp

53

ronantakizawa/gis-dataconversion-mcp

MCP server Claude CodeCodexCursor +2

An MCP server for converting GIS data in different formats. Runs locally from the gis-dataconversion-mcp npm package.

not rated 16 1y ago A tokens not measured original MIT

faostat-mcp

54

berba-q/faostat-mcp

MCP server Claude CodeCodexCursor +2

MCP server exposing the full FAOSTAT API to AI assistants. Runs locally from the faostat-mcp Python package. Needs 3 environment variables to run.

not rated 16 4mo ago A tokens not measured original MIT

ansys-mechanical-mcp

55

codersag/mechanical-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol (MCP) server for Ansys Mechanical through PyMechanical. Runs locally from the ansys-mechanical-mcp Python package.

not rated 16 8d ago A tokens not measured original Apache-2.0

kisti-mcp

56

ansua79/kisti-mcp

MCP server Claude CodeCodexCursor +2

KISTI-MCP Server - MCP server for KISTI OpenAPI (ScienceON, NTIS, DataON). Runs locally from the kisti-mcp Python package.

not rated 15 2mo ago A tokens not measured

mcpymol

57

chemrich/MCPymol

MCP server Claude CodeCodexCursor +2

A conversational MCP server interface for PyMOL protein visualization. Runs locally from the mcpymol Python package.

not rated 15 12d ago A tokens not measured original MIT

scholarly-research-mcp

58

aringadre76/mcp-for-research

MCP server Claude CodeCodexCursor +2

Consolidated MCP server for scholarly research across PubMed, ArXiv, Google Scholar, and JSTOR (5 powerful tools instead of 24). Runs locally from the scholarly-research-mcp npm package.

not rated 15 +1 3mo ago A tokens not measured original MIT

sagemath

59

XBP-Europe/sagemath-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server that provides stateful SageMath computations. Runs locally from the sagemath-mcp Python package.

not rated 14 11d ago A tokens not measured original MIT

papersflow

60

papersflow-ai/papersflow-mcp

MCP server Claude CodeCodexCursor +2

Academic research MCP server for paper search, citation checks, graphs, and deep research. Remote server at doxa.papersflow.ai.

not rated 14 5mo ago A tokens not measured original MIT

mcp-lammps

61

Chenghao-Wu/MCP_LAMMPS

MCP server Claude CodeCodexCursor +2

MCP server "mcp-lammps" as configured in Chenghao-Wu/MCPLAMMPS. Runs locally from the mcp-lammps Python package.

not rated 14 8mo ago A tokens not measured original Apache-2.0 archived

copernicus-mcp

62

CliDyn/copernicus-mcp

MCP server Claude CodeCodexCursor +2

MCP server for safe, validated, reproducible access to Copernicus environmental data. Runs locally from the copernicus-mcp Python package.

not rated 14 1mo ago A tokens not measured original BSD-3-Clause

pubcrawl

63

nickjlamb/pubcrawl

MCP server Claude CodeCodexCursor +2

PubMed & Europe PMC literature search, US/UK drug labelling, and clinical trials for AI assistants. Runs locally from the @pharmatools/pubcrawl npm package. Needs 1 environment variable to run.

not rated 14 +1 3d ago A tokens not measured original MIT

materials-project-mcp

64

benedictdebrah/materials-project-mcp

MCP server Claude CodeCodexCursor +2

MCP server "materials-project-mcp" as configured in benedictdebrah/materials-project-mcp. Runs locally from the materials-project-mcp Python package.

not rated 13 3mo ago A tokens not measured original MIT

stac-mcp

65

BnJam/stac-mcp

MCP server Claude CodeCodexCursor +2

An MCP Server for STAC requests. Runs locally from the stac-mcp Python package.

not rated 13 28d ago A tokens not measured original MIT

yade-mcp

66

yusong652/yade-mcp

MCP server Claude CodeCodexCursor +2

MCP server for YADE open-source discrete element method simulation. Runs locally from the yade-mcp Python package.

not rated 13 7d ago A tokens not measured original MIT

MS-MCP

67

DrYe1109/MS-MCP

MCP server Claude CodeCodexCursor +2

MCP server "MS-MCP" as configured in DrYe1109/MS-MCP. Launched with cmd.exe /d /c Run-MS-MCP.bat.

not rated 13 +1 1mo ago A tokens not measured original MIT

medical-terminologies-mcp

68

SidneyBissoli/medical-terminologies-mcp

MCP server Claude CodeCodexCursor +2

Diagnoses, drugs & lab codes: ICD-11, SNOMED, LOINC, RxNorm, MeSH, ATC, CID-10. 37 tools, MIT. Runs locally from the medical-terminologies-mcp npm package. Needs 7 environment variables to run.

not rated 12 yesterday A tokens not measured original MIT

hecras

69

gpt-cmdr/ras-commander-mcp

MCP server Claude CodeCodexCursor +2

MCP server "hecras" as configured in gpt-cmdr/ras-commander-mcp. Runs locally from the ras-commander-mcp@git+https://github.com/gpt-cmdr/ras-commander-mcp.git Python package. Needs 1 environment variable to run.

not rated 12 2mo ago A tokens not measured original MIT

geo-mcp

70

MCPmed/GEOmcp

MCP server Claude CodeCodexCursor +2

A Model Context Protocol (MCP) server for accessing GEO (Gene Expression Omnibus) data through NCBI E-Utils API. Runs locally from the geo-mcp Python package.

not rated 12 4mo ago A tokens not measured original BSD-3-Clause

mathlas

71

Archerkattri/mathlas

MCP server Claude CodeCodexCursor +2

A tool FOR an AI (no API key, no LLM): search existing math over a 3.7M-doc index + airtight numeric/Lean verification + mathlib search (Loogle/LeanSearch) + OEIS/PSLQ identification + needs guarantees scaffolds, served over MCP. Runs locally from the mathlas-mcp Python package. Needs 2 environment variables to run.

not rated 12 1mo ago A tokens not measured original Apache-2.0

scmcp

72

huang-sh/scmcp

MCP server Claude CodeCodexCursor +2

An MCP server for scRNA-Seq analysis with natural language! Runs locally from the scmcp Python package.

not rated 12 1y ago A tokens not measured copy · 100% BSD-3-Clause