Scientific MCP servers

1,353 tagged Scientific, measured the same way as everything else here.

Browse within: model-context-protocol 288pipeworx 189bioinformatics 56ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15health 14fastapi 13noaa 13multiomics 12

pubmed-advanced-mcp

97

SuyashEkhande/Pubmed-MCP-Advanced

MCP server Claude CodeCodexCursor +2

MCP server "pubmed-advanced-mcp" as configured in SuyashEkhande/Pubmed-MCP-Advanced. Runs locally from the pubmed-advanced-mcp Python package.

not rated 8 8mo ago A tokens not measured

imas-dd

98

iterorganization/IMAS-Codex

MCP server Claude CodeCodexCursor +2

One of 4 in .mcp.json

An IMAS Data Dictionary MCP server. Runs locally from the imas-codex Python package.

not rated 8 4mo ago A tokens not measured

Augmented-Nature/ClinicalTrials-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "clinical-trials-server" as configured in Augmented-Nature/ClinicalTrials-MCP-Server. Runs locally from the clinical-trials-server npm package.

not rated 8 8mo ago A tokens not measured

nds-mcp

101

fkguo/nds-mcp

MCP server Claude CodeCodexCursor +2

Nuclear Data Services MCP server — offline SQLite-backed nuclear physics data queries. Runs locally from the nds-mcp npm package.

not rated 8 3mo ago A tokens not measured

macrostrat

102

blake365/macrostrat-mcp

MCP server Claude CodeCodexCursor +2

Macrostrat MCP Server - Access geological data, rock units, formations, and stratigraphic information worldwide. Runs locally from the macrostrat-mcp npm package.

not rated 8 27d ago A tokens not measured original MIT

endiagram-mcp

103

dushyant30suthar/endiagram-mcp

MCP server Claude CodeCodexCursor +2

EN Diagram — structural verification for concurrent systems. Pure math, no AI. Runs locally from the @endiagram/mcp npm package.

not rated 8 4mo ago A tokens not measured original MIT

mcp-calc-tools

104

nbiish/mcp-calc-tools

MCP server Claude CodeCodexCursor +2

Advanced calculus, finance, linear algebra, probability, and engineering math tools for AI agents via MCP (Model Context Protocol). Runs locally from the mcp-calc-tools npm package.

not rated 8 3mo ago A tokens not measured

mne-mcp

105

Exekiel179/MNE-MCP

MCP server Claude CodeCodexCursor +2

A Model Context Protocol server for MNE-Python neurophysiology analysis (EEG / MEG / sEEG / ECoG / fNIRS). Runs locally from the mne-mcp Python package.

not rated 7 2mo ago A tokens not measured original MIT

scb-mcp

106

isakskogstad/SCB-MCP

MCP server Claude CodeCodexCursor +2

MCP server for Statistics Sweden (SCB) - 1200+ tables with population, economy, environment data. Remote server at scb-mcp.onrender.com.

not rated 7 4mo ago A tokens not measured

fatsecret-mcp

107

fliptheweb/fatsecret-mcp

MCP server Claude CodeCodexCursor +2

MCP server for FatSecret API - food search, nutrition, diary, recipes, weight tracking (unofficial). Runs locally from the fatsecret-mcp npm package. Needs 3 environment variables to run.

not rated 7 1mo ago A tokens not measured original MIT

qgis-mcp

108

kicker315/deepseek_qgis_mcp

MCP server Claude CodeCodexCursor +2

MCP server "qgis-mcp" as configured in kicker315/deepseekqgismcp. Runs locally from the qgis-mcp Python package.

not rated 7 1y ago A tokens not measured

rasdaman-mcp

109

rasdaman/rasdaman-mcp

MCP server Claude CodeCodexCursor +2

MCP server enabling LLM-powered access to multi-dimensional geo-spatial datacubes in rasdaman. Runs locally from the rasdaman-mcp Python package.

not rated 7 15d ago A tokens not measured original MIT

spicelib-mcp

110

lucasgerads/spicelib-mcp

MCP server Claude CodeCodexCursor +2

MCP server for running ngspice simulations via spicelib. Runs locally from the spicelib-mcp Python package.

not rated 7 4mo ago A tokens not measured GPL-3.0

anndata-mcp

111

biocontext-ai/anndata-mcp

MCP server Claude CodeCodexCursor +2

Allows to retrieve information about an AnnData object via MCP. Runs locally from the anndata-mcp Python package.

not rated 7 6mo ago A tokens not measured original MIT

opentrons-mcp

112

yerbymatey/opentrons-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Opentrons HTTP API documentation and endpoint discovery. Runs locally from the opentrons-mcp npm package.

not rated 7 1y ago A tokens not measured original MIT

pyvista-mcp-server

113

pyvista/pyvista-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "pyvista-mcp-server" as configured in pyvista/pyvista-mcp-server. Runs locally from the pyvista-mcp-server Python package.

not rated 7 5d ago A tokens not measured original MIT

addgene-mcp

114

longevity-genie/addgene-mcp

MCP server Claude CodeCodexCursor +2

MCP for Addgene - Plasmid Repository API. Runs locally from the addgene-mcp Python package.

not rated 7 1y ago A tokens not measured original MIT

inspirehep-mcp

115

MohamedElashri/inspirehep-mcp

MCP server Claude CodeCodexCursor +2

MCP server for InspireHEP - integrate high-energy physics literature resources with LLMs. Runs locally from the inspirehep-mcp Python package.

not rated 7 yesterday A tokens not measured AGPL-3.0

paper-find-mcp

116

h-lu/paper-find-mcp

MCP server Claude CodeCodexCursor +2

A MCP server for searching and downloading academic papers from multiple sources. Runs locally from the paper-find-mcp Python package.

not rated 7 8mo ago A tokens not measured

mcp-origin-pro

117

ZHANG-923-ZE/origin-MCP

MCP server Claude CodeCodexCursor +2

MCP server "mcp-origin-pro" as configured in ZHANG-923-ZE/origin-MCP. Runs locally from the mcp-origin-pro Python package.

not rated 7 3mo ago A tokens not measured original MIT

galaxy-morphology-mcp

118

weinaike/galaxy_morphology_mcp

MCP server Claude CodeCodexCursor +2

MCP server "galaxy-morphology-mcp" as configured in weinaike/galaxymorphologymcp. Runs locally from the galaxy-morphology-mcp Python package.

not rated 7 yesterday A tokens not measured

qiskit-mcp-server

119

barvhaim/qiskit-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server for Qiskit quantum computing capabilities with circuit serialization utilities. Runs locally from the qiskit-mcp-server Python package.

not rated 7 1y ago A tokens not measured

lacuna-research-mcp

120

tiptreesystems/lacuna-research-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Lacuna, a research map for machine learning: search directions, papers, authors, venues, and AI-generated research proposals. Runs locally from the lacuna-research-mcp Python package.

not rated 6 1mo ago A tokens not measured original MIT

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