Scientific MCP servers

1,371 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 350model-context-protocol 299pipeworx 189bioinformatics 59LLM 45agentic-ai 30ai-tools 26fastmcp 24llm-tools 23cyanheads 19arxiv 18climate 15healthcare 15fastapi 14

clouatre-labs/math-mcp-learning-server

MCP server Claude CodeCodexCursor +2

Educational MCP server for math operations, statistics, visualization, and persistent workspaces. Built with FastMCP. Runs locally from the math-mcp-learning-server Python package.

not rated 5 2d ago A tokens not measured

vedurstofa-mcp

170

sandsower/vedurstofa-mcp

MCP server Claude CodeCodexCursor +2

MCP server for Icelandic weather, forecasts, warnings, and earthquakes from vedur.is. Runs locally from the vedurstofa-mcp npm package.

not rated 5 6mo ago A tokens not measured

icd10-terminology

171

FareedKhan-dev/vellum

MCP server Claude CodeCodexCursor +2

MCP server "icd10-terminology" as configured in FareedKhan-dev/vellum. Runs icd10_coder.mcp.server with python. Needs 1 environment variable to run.

not rated 5 3mo ago A tokens not measured

zen-apps/mcp-nutrition-tools

MCP server Claude CodeCodexCursor +2

MCP server "usda-nutrition-mcp-server" as configured in zen-apps/mcp-nutrition-tools. Runs locally from the usda-nutrition-mcp-server npm package.

not rated 5 1y ago A tokens not measured

medcalc

173

vitaldb/medcalc

MCP server Claude CodeCodexCursor +2

MCP server for Medical Calculation. Runs locally from the medcalc Python package.

not rated 5 5mo ago A tokens not measured

aschenmo/termonline-mcp

MCP server Claude CodeCodexCursor +2

MCP server "medical-search-mcp-server" as configured in aschenmo/termonline-mcp. Runs locally from the medical-search-mcp-server npm package.

not rated 5 1y ago A tokens not measured original MIT

acl2-mcp

175

septract/acl2-mcp

MCP server Claude CodeCodexCursor +2

MCP server "acl2-mcp" as configured in septract/acl2-mcp. Runs locally from the acl2-mcp Python package.

not rated 5 1y ago A tokens not measured original BSD-3-Clause

chuk-mcp-solver

176

IBM/chuk-mcp-solver

MCP server Claude CodeCodexCursor +2 ✓ vendor

General-purpose constraint and optimization solver MCP server. Runs locally from the chuk-mcp-solver Python package.

not rated 5 1mo ago A tokens not measured original Apache-2.0 archived

paper-search-mcp

177

TitanSneaker/paper-search-mcp-openai

MCP server Claude CodeCodexCursor +2

A MCP server for searching and downloading academic papers from multiple sources. Runs locally from the paper-search-mcp Python package.

not rated 5 11mo ago A tokens not measured original MIT

edison-mcp

178

longevity-genie/edison_mcp

MCP server Claude CodeCodexCursor +2

MCP server for Edison Scientific platform integration (former FutureHouse). Runs locally from the edison-mcp Python package.

not rated 5 9mo ago A tokens not measured original MIT

yesc97/biopharma-catalyst-mcp

MCP server Claude CodeCodexCursor +2

Forensic biopharma catalyst auditor — 10 tools, deterministic CLEAN/BEARSIGNAL verdict. Runs locally from the biopharma-catalyst-mcp npm package. Needs 1 environment variable to run.

not rated 5 5mo ago A tokens not measured original ISC

math-mcp

180

codeprimate/math-mcp

MCP server Claude CodeCodexCursor +2

MCP server "math-mcp" as configured in codeprimate/math-mcp. Runs in Docker.

not rated 5 24d ago A tokens not measured original MIT

jupyter-editor-mcp

181

jsamuel1/jupyter-editor-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server providing 29 specialized tools for programmatic Jupyter notebook editing with format preservation, batch operations, and no Jupyter server required. Runs locally from the jupyter-editor-mcp Python package.

not rated 5 +1 2d ago A tokens not measured original MIT

pds-mcp-server

182

NASA-PDS/pds-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "pds-mcp-server" as configured in NASA-PDS/pds-mcp-server. Runs locally from the pds-mcp-server Python package.

not rated 5 2mo ago A tokens not measured original MIT

baltamatica-mcp

183

wzlwww/baltamatica.mcp

MCP server Claude CodeCodexCursor +2

A local MCP server for Baltamatica, a scientific-computing engine. MCP is a standard way for AI tools to call external programs.

not rated 5 3mo ago A tokens not measured original MIT

open-ephemeris

184

openephemeris/openephemeris-MCP

MCP server Claude CodeCodexCursor +2

Sub-arcsecond astrology on NASA JPL DE440: natal, transits, Human Design, Vedic, BaZi. Remote server at mcp.openephemeris.com.

not rated 5 yesterday A tokens not measured original MIT

ensembl-server

185

Augmented-Nature/Ensembl-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "ensembl-server" as configured in Augmented-Nature/Ensembl-MCP-Server. Runs locally from the ensembl-server npm package.

not rated 5 +1 10mo ago A tokens not measured

mcp-genelab-local

186

sbl-sdsc/mcp-genelab

MCP server Claude CodeCodexCursor +2

One of 2 in claude_desktop_config.json

MCP server for querying Neo4j Knowledge Graphs with custom tools for quering GeneLab. Runs locally from the mcp-genelab Python package. Needs 5 environment variables to run.

not rated 5 +1 8d ago A tokens not measured original BSD-3-Clause

fiji-mcp-server

187

surajinacademia/Fiji_imageJ_mcp

MCP server Claude CodeCodexCursor +2

Minimal MCP server for controlling Fiji/ImageJ through commands, IJM, Groovy, images, and results. Runs locally from the fiji-mcp-server Python package.

not rated 5 +3 1mo ago A tokens not measured original BSD-3-Clause

mcp-server-cantera

188

StepFunctionLLC/mcp-server-cantera

MCP server Claude CodeCodexCursor +2

MCP server "mcp-server-cantera" as configured in StepFunctionLLC/mcp-server-cantera. Runs locally from the mcp-server-cantera Python package.

not rated 5 yesterday A tokens not measured original MIT

gis

189

matbel91765/GIS-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP Server for geospatial operations - geocoding, routing, spatial analysis. Runs locally from the locusync-server Python package.

not rated 4 3mo ago A tokens not measured original MIT

smaniches/alphafold-sovereign-mcp

MCP server Claude CodeCodexCursor +2

MCP server wrapping AlphaFold DB and 8 other biomedical data sources, with a local SQLite knowledge graph. Runs locally from the alphafold-sovereign-mcp Python package.

not rated 4 yesterday A tokens not measured original Apache-2.0

aws-healthomics

191

aws-samples/sample-healthomics-agentic-setup

MCP server Claude CodeCodexCursor +2 ✓ vendor

MCP server "aws-healthomics" as configured in aws-samples/sample-healthomics-agentic-setup. Runs locally from the awslabs.aws-healthomics-mcp-server@latest Python package. Needs 2 environment variables to run.

not rated 4 1mo ago A tokens not measured MIT-0

chuk-mcp-math-server

192

IBM/chuk-mcp-math-server

MCP server Claude CodeCodexCursor +2 ✓ vendor

Configurable mathematical computation server for MCP protocol. Runs locally from the chuk-mcp-math-server Python package.

not rated 4 8mo ago A tokens not measured original Apache-2.0 archived