agentmods.dev

Scientific MCP servers

1,353 tagged Scientific, measured the same way as everything else here.

Browse within: mcp-server 332model-context-protocol 288pipeworx 189bioinformatics 56LLM 44agentic-ai 30ai-tools 24fastmcp 23llm-tools 22cyanheads 21arxiv 18climate 15healthcare 15health 14

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chuk-mcp-math-server

169

IBM/chuk-mcp-math-server

MCP server Claude CodeCodexCursor +2 ✓ vendor

Configurable mathematical computation server for MCP protocol. Runs locally from the chuk-mcp-math-server Python package.

not rated 4 6mo ago A tokens not measured original Apache-2.0

proteinatlas-server

170

Augmented-Nature/ProteinAtlas-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server "proteinatlas-server" as configured in Augmented-Nature/ProteinAtlas-MCP-Server. Runs locally from the proteinatlas-server npm package.

not rated 4 8mo ago A tokens not measured

weather

171

haichaozheng/weather-mcp

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 4 1y ago A tokens not measured

planetary-computer-mcp

172

isaaccorley/planetary-computer-mcp

MCP server Claude CodeCodexCursor +2

A Python MCP Server for interacting with the Planetary Computer STAC Catalog. Runs locally from the planetary-computer-mcp Python package.

not rated 4 4mo ago A tokens not measured original Apache-2.0

jupyter-editor-mcp

173

jsamuel1/jupyter-editor-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol server providing 29 specialized tools for programmatic Jupyter notebook editing with format preservation, batch operations, and no Jupyter server required. Runs locally from the jupyter-editor-mcp Python package.

not rated 4 7mo ago A tokens not measured original MIT

mcpxquantum

174

PaulGoldschmidt/qsim-mcp

MCP server Claude CodeCodexCursor +2

MCP server "mcpxquantum" as configured in PaulGoldschmidt/qsim-mcp. Runs locally from the mcpxquantum Python package.

not rated 4 1y ago A tokens not measured archived

icelandic-morphology-mcp

175

mideind/icelandic-morphology-mcp

MCP server Claude CodeCodexCursor +2

MCP server "icelandic-morphology-mcp" as configured in mideind/icelandic-morphology-mcp. Runs locally from the icelandic-morphology-mcp Python package.

not rated 4 8mo ago A tokens not measured original MIT

bach-clinical-trials

176

BACH-AI-Tools/ClinicalTrials-MCP-Server

MCP server Claude CodeCodexCursor +2

MCP server for accessing ClinicalTrials.gov API - search and retrieve clinical trial data. Runs locally from the bach-clinical-trials npm package.

not rated 4 9mo ago A tokens not measured original MIT

the-notebook-mcp

177

svallory/the-notebook-mcp

MCP server Claude CodeCodexCursor +2

Model Context Protocol (MCP) implementation for Jupyter notebooks to overcome limitation with Cursor. Runs locally from the the-notebook-mcp Python package.

not rated 4 1y ago A tokens not measured original MIT

jupyter-kernel-mcp

178

codewithcheese/jupyter-kernel-mcp

MCP server Claude CodeCodexCursor +2

MCP server for stateful Jupyter kernel development with multi-language support (Python, TypeScript, JavaScript). Runs locally from the jupyter-kernel-mcp Python package.

not rated 4 1y ago A tokens not measured

yamcs-mcp-server

179

PaulMRamirez/yamcs-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "yamcs-mcp-server" as configured in PaulMRamirez/yamcs-mcp-server. Runs locally from the yamcs-mcp-server Python package.

not rated 4 10mo ago A tokens not measured original MIT

mcp-slurm

180

tejasvinu/mcp-slurm

MCP server Claude CodeCodexCursor +2

SLURM MCP server for HPC cluster management. Runs locally from the mcp-slurm npm package.

not rated 4 1y ago A tokens not measured

pubmed-mcp-server

181

hanxuanliang/pubmed-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "pubmed-mcp-server" as configured in hanxuanliang/pubmed-mcp-server. Runs locally from the pubmed-mcp-server Python package.

not rated 4 1y ago A tokens not measured original MIT

geoanalisis-mcp

182

alexrobl/geoanalisis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "geoanalisis-mcp" as configured in alexrobl/geoanalisis-mcp. Runs locally from the geoanalisis-mcp Python package.

not rated 4 11d ago A tokens not measured original MIT

amesim-mcp-server

183

SometingGBBB/Simcenter-Amesim-MCP

MCP server Claude CodeCodexCursor +2

MCP server "amesim-mcp-server" as configured in SometingGBBB/Simcenter-Amesim-MCP. Runs locally from the amesim-mcp-server Python package.

not rated 5 24d ago A tokens not measured

openfda

184

ythalorossy/openfda

MCP server Claude CodeCodexCursor +2

MCP server "openfda" as configured in ythalorossy/openfda. Launched with openfda. Needs 1 environment variable to run.

not rated 4 5mo ago A tokens not measured original MIT

dicom-mcp

186

PancrePal-xiaoyibao/dicom_download_mcp

MCP server Claude CodeCodexCursor +2

MCP server for DICOM image downloading from multiple medical imaging sources. Runs locally from the dicom-mcp npm package.

not rated 4 7mo ago A tokens not measured

decoupler-mcp

187

scmcphub/decoupler-mcp

MCP server Claude CodeCodexCursor +2

Natural language interface for biological activities analysis with decoupler through MCP. Runs locally from the decoupler-mcp Python package.

not rated 4 1y ago A tokens not measured

NCBI Research Assistant

188

hamzameer/ncbi-mcp-server

MCP server Claude CodeCodexCursor +2

MCP server "NCBI Research Assistant" as configured in hamzameer/ncbi-mcp-server. Launched with /Users/S228627/.local/bin/uv run --with mcp[cli] mcp run /Users/S228627/Library/. Needs 1 environment variable to run.

not rated 4 1y ago A tokens not measured

weather

189

PHOENIXxXTM/Claude-MCP-Server

MCP server Claude CodeCodexCursor +2

PyWeather branch; bindings for Davis Vantage Pro and Pro2 weather stations, upload of weather data (e.g. wunderground.com), and meteorological calculation/conversion functions. Runs locally from the weather Python package.

not rated 4 9mo ago A tokens not measured

argus

190

GifariKemal/argus-web-mcp

MCP server Claude CodeCodexCursor +2

Helper routines for using multiple, inexpensive calibrated and synchronized cameras for 3D scientific use. Runs locally from the argus Python package.

not rated 4 27d ago A tokens not measured

beam-analysis-mcp

191

StructuralWizard/beam-analysis-mcp

MCP server Claude CodeCodexCursor +2

MCP server "beam-analysis-mcp" as configured in StructuralWizard/beam-analysis-mcp. Runs locally from the beam-analysis-mcp npm package.

not rated 4 2mo ago A tokens not measured original MIT

molecare-mcp

192

MoleCare/molecare-mcp

MCP server Claude CodeCodexCursor +2

Educational dermatology knowledge and lesion tooling. No credentials needed. Not a medical device. Runs locally from the molecare-mcp npm package. Needs 5 environment variables to run.

not rated 4 +1 today A tokens not measured original Apache-2.0