Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
git clone --depth 1 https://github.com/galaxyproject/foundryWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/plugins/galaxyproject/foundry/claude)<a href="https://agentmods.dev/plugins/galaxyproject/foundry/claude"><img src="https://agentmods.dev/badge/plugins/galaxyproject/foundry/claude/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/plugins/galaxyproject/foundry/claude"><img src="https://agentmods.dev/badge/plugins/galaxyproject/foundry/claude.svg" alt="Reviewed on agentmods" width="80" height="20"></a>Grade A, and why
foundry-skills scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 15d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
The source is not reproduced here
A licence we could not identify
The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.
What it installs
The manifest is a name and a version. 69 skills travel with it, and installing the plugin installs all of them — 2,140 tokens a session between them. Each is measured on its own page, and each can be installed alone.
- Skill summarize-nextflow A 35 tokens
- Skill convert-nfcore-module-to-galaxy-tool A 33 tokens
- Skill advance-galaxy-draft-step A 36 tokens
- Skill nextflow-summary-to-galaxy-template A 29 tokens
- Skill workflow-brief-to-galaxy-template A 31 tokens
- Skill compare-against-iwc-exemplar A 33 tokens
- Skill cwl-summary-to-galaxy-template A 29 tokens
- Skill discover-shed-tool A 33 tokens
- Skill find-test-data A 20 tokens
- Skill freeform-summary-to-galaxy-template A 28 tokens
- Skill implement-galaxy-tool-step A 23 tokens
- Skill implement-galaxy-workflow-test A 17 tokens
- Skill mature-galaxy-workflow-for-iwc A 32 tokens
- Skill pipeline-cwl-to-galaxy A 55 tokens
- Skill pipeline-galaxy-workflow-maturation A 57 tokens
- Skill pipeline-galaxy-workflow-review A 57 tokens
- Skill pipeline-interview-to-galaxy A 52 tokens
- Skill pipeline-nextflow-to-cwl A 49 tokens
- Skill pipeline-nextflow-to-galaxy A 48 tokens
- Skill pipeline-paper-to-galaxy A 44 tokens
- Skill pipeline-update-interview-to-galaxy A 66 tokens
- Skill pipeline-workflow-brief-to-galaxy A 54 tokens
- Skill review-galaxy-workflow A 30 tokens
- Skill summarize-cwl A 26 tokens
- Skill summarize-galaxy-tool A 24 tokens
- Skill workflow-brief-to-galaxy-test-plan A 33 tokens
- Skill apply-galaxy-workflow-changeset A 36 tokens
- Skill author-galaxy-tool-wrapper A 22 tokens
- Skill changeset-to-galaxy-test-plan A 38 tokens
- Skill cwl-summary-to-galaxy-data-flow A 23 tokens
- Skill freeform-summary-to-galaxy-test-plan A 28 tokens
- Skill nextflow-summary-to-galaxy-data-flow A 23 tokens
- Skill nextflow-to-test-data A 23 tokens
- Skill pipeline-interview-to-workflow-brief A 51 tokens
- Skill pipeline-nextflow-to-workflow-brief A 52 tokens
- Skill pipeline-paper-to-cwl A 45 tokens
- Skill pipeline-paper-to-workflow-brief A 49 tokens
- Skill repair-galaxy-draft-topology A 29 tokens
- Skill run-workflow-test A 22 tokens
- Skill summarize-galaxy-workflow A 34 tokens
- Skill workflow-brief-to-galaxy-data-flow A 27 tokens
- Skill workflow-brief-to-galaxy-interface A 29 tokens
- Skill cwl-summary-to-galaxy-interface A 22 tokens
- Skill cwl-test-to-galaxy-test-plan A 22 tokens
- Skill cwl-to-test-data A 23 tokens
- Skill debug-galaxy-workflow-output A 26 tokens
- Skill freeform-summary-to-galaxy-data-flow A 24 tokens
- Skill freeform-summary-to-galaxy-interface A 23 tokens
- Skill freeform-summary-to-workflow-brief A 27 tokens
- Skill interview-to-galaxy-workflow-changeset A 34 tokens
- Skill nextflow-summary-to-galaxy-interface A 22 tokens
- Skill nextflow-summary-to-galaxy-reference-data A 27 tokens
- Skill nextflow-summary-to-workflow-brief A 27 tokens
- Skill nextflow-test-to-galaxy-test-plan A 22 tokens
- Skill report-foundry-run-feedback A 30 tokens
- Skill validate-galaxy-workflow A 23 tokens
- Skill interview-to-freeform-summary A 23 tokens
- Skill nextflow-test-to-cwl-test-plan A 22 tokens
- Skill paper-to-test-data A 19 tokens
- Skill debug-cwl-workflow-output A 22 tokens
- Skill freeform-summary-to-cwl-design A 22 tokens
- Skill implement-cwl-tool-step A 21 tokens
- Skill implement-cwl-workflow-test A 20 tokens
- Skill nextflow-summary-to-cwl-data-flow A 23 tokens
- Skill nextflow-summary-to-cwl-interface A 22 tokens
- Skill summarize-cwl-tool A 28 tokens
- Skill summarize-paper A 19 tokens
- Skill summary-to-cwl-template A 22 tokens
- Skill validate-cwl A 20 tokens
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 15d ago Changed b5d1e3a02ef8
- 1mo ago First seen · 13 lines scan A 3b8ff389755e
foundry-skills is a plugin published in the GitHub repository galaxyproject/foundry (4 stars, last pushed today), with no licence file. Its token cost is not measured: this kind of file is read by the harness, not the model. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.
Other plugins, from other repositories
antimicrobial-resistance-scientist
Reasons from MIC distributions, ECOFFs, and phenotype–genotype concordance through EUCAST/CLSI AST, CARD/RGI and AMRFinderPlus resistomes, GLASS/WHONET/NARMS surveillance, carbapenemase/ESBL/MRSA mechanism panels, and heteroresistance PAP while treating breakpoint mixing, genotype-without-phenotype overclaim…
catalysis-scientist
Reasons from active-site structure, turnover frequency, selectivity, and the Sabatier principle through CO/H2 chemisorption site-counting, Weisz-Prater and Mears transport checks, Langmuir-Hinshelwood/Mars-van Krevelen kinetics, and operando DRIFTS/XAS while treating diffusion-limited apparent rates, DRIFTS spectator…
hypha
Hypha is the AI agent of the Mycelium ecosystem: a connecting filament between engineers and the SysML v2 specification. Provides skills and subagents for KerML/SysML v2 metamodel lookup, standard model library lookup, normative spec citation, and SysML v2 textual-notation validation.
r2g-skills
RTL-to-GDS-to-Graph skill collection. eda-install detects the machine and installs + verifies the open-source EDA toolchain (with a no-sudo conda path). signoff-loop drives an open-source EDA flow (Yosys + OpenROAD-flow-scripts + KLayout + Magic + Netgen + OpenRCX) from a spec or RTL to signed-off GDSII (DRC, LVS…
ar
ar — autoresearch: a skill-only autonomous experiment loop. Propose → measure → keep winners → repeat, against any numeric objective, with noise-floor gating so nothing is banked on noise. Five skills: /ar:start opens a run (dedicated branch + baseline noise floor), /ar:resume advances it, /ar:status prints read-only…
biorxiv-mcp-server
Search and retrieve bioRxiv and medRxiv preprints — by DOI, date interval, or keyword — via MCP. STDIO or Streamable HTTP.