paper-to-test-data

paper-to-test-data is a skill for Claude Code, Codex from galaxyproject/foundry. It costs 17 tokens per session (562 once invoked), scanned A, original, no licence file.

A method for deriving workflow test inputs and expected results from a research paper. A workflow is a series of processing steps that turns inputs into outputs.

In plain words
What is it for?
Use it to identify sample inputs and expected outputs for testing a research workflow.
Why use it?
It helps create tests from the evidence and examples described in the paper. This provides test material when no ready-made test cases are available.

Skill for Claude CodeCodex

Part of the foundry-skills plugin — 55 skills shipped together

Install

Getting it into your agent

One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.

agentmods
npx agentmods add skills/galaxyproject/foundry/paper-to-test-data
Any agent
npx skills add galaxyproject/foundry --skill paper-to-test-data
Clone the repo
git clone --depth 1 https://github.com/galaxyproject/foundry

Made for: Claude Code, Codex.

Or install foundry-skills, the plugin that ships this one along with the rest of its 55 skills.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for paper-to-test-data

README.md
[![agentmods](https://agentmods.dev/badge/skills/galaxyproject/foundry/paper-to-test-data.svg)](https://agentmods.dev/skills/galaxyproject/foundry/paper-to-test-data)
Your own site
<a href="https://agentmods.dev/skills/galaxyproject/foundry/paper-to-test-data"><img src="https://agentmods.dev/badge/skills/galaxyproject/foundry/paper-to-test-data.svg" alt="Measured on agentmods" height="20"></a>
Per session 17 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 562 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. Scan, not verified.
Origin unknown No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5 $0.00017 $0.00562
Opus 5 $0.00009 $0.00281
Sonnet 5 $0.00003 $0.00112
Haiku 4.5 $0.00002 $0.00056

Measured 4d ago against content hash 9c683a4eeb31, method: parsed. Prices are Anthropic first-party input rates as of 2026-08-30, from the pricing page.

Security

Grade A, and why

paper-to-test-data scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 4d ago.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

casts/claude/skills/paper-to-test-data/SKILL.md · 56 lines

The source is not reproduced here

A licence we could not identify

The repository carries a LICENSE file, but it is custom or dual enough that GitHub cannot name it and neither can this catalogue. Unknown terms are not permission, so the body is not copied here. Read the licence at the source and decide for yourself.

Read it on GitHub

Files

What ships with it

3 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. 4d ago First seen · 56 lines · 17 tokens per session scan A 9c683a4eeb31

Subscribe to this mod's changes

paper-to-test-data is a skill published in the GitHub repository galaxyproject/foundry (2 stars, last pushed yesterday), with no licence file. It adds 17 tokens to every session and 562 once invoked, about $0.0001 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-31.

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