Scientific plugins

427 tagged Scientific, measured the same way as everything else here.

Browse within: prompt-engineering 31Science 30agents-md 30bioinformatics 24cyanheads 18academic-writing 15arxiv 12claude-plugin 10bun 8claude-skill 8machine-learning 8academic 6agentic-skills 6claude-code-skills 6

polyviz

145

cognitive-fab/polygraph

Plugin Claude Code

Bundles 1 skill, 1 command, 1 agent · 379 tokens together

A deterministic, artifact-derived diagram renderer for Polygraph. Turns the artifacts the suite already produces — the state machine, the invariants, the counterexample, the polyvers compat verdict — into a fixed catalog of clean, brand-consistent SVGs (optional PNG). Same inputs → byte-identical output; no model call.

11 6d ago A tokens not measured original Apache-2.0

proteus

147

jvogan/proteus

Plugin Claude Code

Bundles 1 skill · 169 tokens together

Proteus skills for public-safe structural biology automation and molecular visualization workflows.

10 1mo ago A tokens not measured original MIT

scholar-feed

148

YGao2005/scholar-feed-mcp

Plugin Claude Code

Bundles 2 MCP servers

Search 600,000+ CS/AI/ML papers with LLM novelty analysis, citation graph, full-text extraction, and BibTeX, without leaving Claude Code. Built for literature reviews.

10 7d ago A tokens not measured original MIT

nice-figures

150

Mapika/nice-figures

Plugin Claude Code

Bundles 1 skill · 183 tokens together

Generate matplotlib figures in a soft-pastel, warm-earth, research-blog visual register — bold sans-serif display titles, scatter overlaid with smoothed trends and shaded confidence bands, signature rounded bars, minimal axes, and '↓better' badges. White background by default (conference-ready), with an opt-in warm…

10 2mo ago A tokens not measured original MIT

coqtail-mcp

152

park-sunho/Coqtail-mcp

Plugin Claude Code

Bundles 1 skill, 4 agents · 443 tokens together

Drive a live Rocq/Coq proof session through coqtail-mcp. Bundles the skill (server mechanics + proof recipes) and four named subagents (proof-repair, admitted-filler-deep, axiom-auditor, proof-golfer).

10 1mo ago A tokens not measured

hypha

153

mycelium-cmbse/mycelium-hypha

Plugin Claude Code

Bundles 5 skills, 1 command, 3 agents · 679 tokens together

Hypha is the AI agent of the Mycelium ecosystem: a connecting filament between engineers and the SysML v2 specification. Provides skills and subagents for KerML/SysML v2 metamodel lookup, standard model library lookup, normative spec citation, and SysML v2 textual-notation validation.

10 11d ago A tokens not measured original Apache-2.0

nf-core

154

jonasscheid/claude-nfcore-plugin

Plugin Claude Code

Bundles 4 skills, 6 agents, 2 hooks · 529 tokens together

Comprehensive Claude Code plugin for nf-core Nextflow pipeline development. Includes skills for pipeline creation, module management, linting, testing, and release preparation following nf-core best practices.

10 3mo ago A tokens not measured original MIT

tidymodels-skills

155

tidymodels/skills

Plugin Claude Code

Bundles 6 skills, 1 hook · 310 tokens together

Claude Code skills for the Tidymodels ecosystem — developer tools for building extensions and user guides for data analysis and modeling.

9 5d ago A tokens not measured

geoai

156

muend/geoai-skills

Plugin Claude Code

Bundles 18 skills · 2,017 tokens together

18 Agent Skills covering the full geospatial data science lifecycle: data engineering, remote sensing, Earth Engine, deep learning, spatial statistics, geostatistics, terrain, networks, LiDAR, trajectories, change detection, MCDA, PostGIS, cartography, and guarded ArcGIS Pro automation.

9 27d ago A tokens not measured original MIT

reaper

157

SebastianElvis/reaper

Plugin Claude Code

Bundles 10 skills · 484 tokens together

AI-native scientific research pipeline. Takes a research goal — optionally with a research paper — and autonomously conducts rigorous, multi-step academic research.

9 4mo ago A tokens not measured original Apache-2.0

lsdyna-kagent

162

LLK-LL/K-agent

Plugin Claude Code

Bundles 1 skill, 1 agent · 196 tokens together

LS-DYNA K-file authoring agent: turns natural-language simulation requests into complete, solver-verified .k input decks (crash / drop / penetration / forming / ALE / SPH). Includes local keyword-manual lookup, material library, search-only literature support through a reuse-first academic-search MCP fallback, mesh…

8 1mo ago A tokens not measured original MIT

scholar-sidekick

163

mlava/scholar-sidekick-mcp

Plugin Claude Code

Bundles 1 skill · 153 tokens together

Catch AI-fabricated citations: verifyCitation cross-checks a claimed title against the real record at its identifier, detecting the dominant real-DOI + invented-title pattern (Topaz et al., Lancet 2026) that simple DOI resolution cannot catch. Also checks retraction and open-access status, and resolves eight…

8 10d ago A tokens not measured original MIT

mlcraft

164

mxslr/mlcraft

Plugin Claude Code

Bundles 23 skills, 1 command, 1 agent · 2,838 tokens together

Professional AI/ML research-engineer workflow: research papers first, pick the best method for each problem (computer vision, medical imaging, NLP/LLM, tabular, time-series, audio and speech, recommendation, generative, reinforcement learning, graph, multimodal, video, 3D, and anomaly detection), train and fine-tune…

8 1mo ago A tokens not measured original MIT

paper-agent

166

Rekin226/paper-agent

Plugin Claude Code

Bundles 1 skill, 1 MCP server · 246 tokens together

Draft, review, revise, proofread, and audit quantitative-science journal manuscripts at submission quality. Five strict modes, Semantic Scholar citation integrity, .docx round-trip.

8 8d ago A tokens not measured original MIT

photonforge

168

flexcompute/plugin-marketplace

Plugin Claude Code

Bundles 8 skills · 1,288 tokens together

PhotonForge PCell, layout, routing, circuit/time-domain simulation, project versioning + cloud-GUI (photonforge-server), serialization, GUI automation, LiveViewer, variation-aware yield/DFM, and documentation guidance for AI coding agents.

8 7d ago A tokens not measured