Scientific plugins

578 tagged Scientific, measured the same way as everything else here.

Browse within: LLM 118prompt-engineering 104agentic-ai 102Science 97agents-md 97claude-code-plugin 34bioinformatics 32mcp-server 31academic-writing 24codex-plugin 22github-copilot 21matlab 21ai-tools 18matlab-mcp-server 18

superRA

145

FuZhiyu/superRA

Plugin Claude Code

Bundles 22 skills, 3 hooks · 1,030 tokens together

Disciplined AI Research Assistant for economists: plan-implement-integrate workflow with implementer–reviewer pair, data-analysis discipline, and drift-test-verified integration.

not rated 11 +2 changed 12d ago A tokens not measured original MIT

proteus

147

jvogan/proteus

Plugin Claude Code

Bundles 1 skill · 169 tokens together

Proteus skills for public-safe structural biology automation and molecular visualization workflows.

not rated 10 3mo ago A tokens not measured original MIT

nice-figures

148

Mapika/nice-figures

Plugin Claude Code

Bundles 1 skill · 183 tokens together

Generate matplotlib figures in a soft-pastel, warm-earth, research-blog visual register — bold sans-serif display titles, scatter overlaid with smoothed trends and shaded confidence bands, signature rounded bars, minimal axes, and '↓better' badges. White background by default (conference-ready), with an opt-in warm…

not rated 10 4mo ago A tokens not measured original MIT

coqtail-mcp

149

park-sunho/Coqtail-mcp

Plugin Claude Code

Bundles 1 skill, 4 agents · 443 tokens together

Drive a live Rocq/Coq proof session through coqtail-mcp. Bundles the skill (server mechanics + proof recipes) and four named subagents (proof-repair, admitted-filler-deep, axiom-auditor, proof-golfer).

not rated 10 3mo ago A tokens not measured

nf-core

150

jonasscheid/claude-nfcore-plugin

Plugin Claude Code

Bundles 4 skills, 6 agents, 2 hooks · 529 tokens together

Comprehensive Claude Code plugin for nf-core Nextflow pipeline development. Includes skills for pipeline creation, module management, linting, testing, and release preparation following nf-core best practices.

not rated 10 5mo ago A tokens not measured original MIT

reaper

151

SebastianElvis/reaper

Plugin Claude Code

Bundles 10 skills · 292 tokens together

AI-native scientific research pipeline. Takes a research goal — optionally with a research paper — and autonomously conducts rigorous, multi-step academic research.

not rated 10 +1 20d ago A tokens not measured original Apache-2.0

omics-skills

153

fmschulz/omics-skills

Plugin Claude Code

Bundles 34 skills, 4 agents · 1,570 tokens together

Bioinformatics, literature discovery, scientific writing, and data visualization agents and skills for Claude Code and Cowork.

not rated 10 changed 1mo ago A tokens not measured original MIT

alphadynamics

154

krisss0mecom/AlphaDynamics

Plugin Claude Code

Bundles 1 skill · 105 tokens together

Predict torsion-angle ensembles for any peptide sequence using AlphaDynamics — natural-language interface to the alphadynamics pip package.

not rated 9 5mo ago A tokens not measured original Apache-2.0

photonforge

157

flexcompute/plugin-marketplace

Plugin Claude Code

Bundles 8 skills · 1,288 tokens together

PhotonForge PCell, layout, routing, circuit/time-domain simulation, project versioning + cloud-GUI (photonforge-server), serialization, GUI automation, LiveViewer, variation-aware yield/DFM, and documentation guidance for AI coding agents.

not rated 9 19d ago A tokens not measured

faostat-skills

158

berba-q/faostat-skills

Plugin Claude Code

Bundles 14 skills, 14 commands · 2,260 tokens together

Analysis skills for UN FAOSTAT food and agriculture data. Country profiles, commodity briefings, trade analysis, climate assessments, and data visualizations. Works with any AI assistant that supports the SKILL.md format.

not rated 9 6mo ago A tokens not measured original MIT

Pavel-Kravchenko/Bioinformatics

Plugin Claude Code

218 bioinformatics skills for Claude Code — sequence analysis, NGS pipelines, single-cell, metagenomics, structural biology, cheminformatics, algorithms, mathematics & physics foundations, and AI for science.

not rated 9 +1 changed yesterday A tokens not measured

mlcraft

163

mxslr/mlcraft

Plugin Claude Code

Bundles 23 skills, 1 command, 1 agent · 2,838 tokens together

Professional AI/ML research-engineer workflow: research papers first, pick the best method for each problem (computer vision, medical imaging, NLP/LLM, tabular, time-series, audio and speech, recommendation, generative, reinforcement learning, graph, multimodal, video, 3D, and anomaly detection), train and fine-tune…

not rated 8 3mo ago A tokens not measured original MIT

paper-agent

164

Rekin226/paper-agent

Plugin Claude Code

Bundles 1 skill, 2 MCP servers · 202 tokens together

Draft, review, revise, proofread, audit, and format quantitative-science journal manuscripts at submission quality. Six strict modes, Semantic Scholar citation integrity, .docx round-trip.

not rated 8 changed 14d ago A tokens not measured original MIT

snowstorm-mcp-server

165

IHTSDO/snowstorm-mcp-server

Plugin Claude Code

Bundles 2 skills, 1 MCP server · 135 tokens together

Query SNOMED CT clinical terminology via Snowstorm and Snowstorm Lite backends. Lookup, search, validation, hierarchy navigation, and value set expansion across all SNOMED CT editions (International, US, UK, AU, etc.).

not rated 8 6d ago A tokens not measured original Apache-2.0

WolframInstitute/ClaudePluginComputationalResearch

Plugin Claude Code

Bundles 27 skills, 31 commands, 6 agents, 1 hook · 3,994 tokens together

AI-assisted computational research with one rule for every folder (the documents in progress in the folder itself, what was made once in Artifacts under a dated stem, what is superseded in Archive, nothing ever overwritten) and papers living in Research beside the research notebooks, license-aware MCP-first Wolfram…

not rated 8 changed 12d ago A tokens not measured

music-analyzer

168

BENZEMA216/music-analyzer

Plugin Claude Code

Bundles 9 skills · 159 tokens together

Analyze local audio files, extract rhythm/emotion/timbre/tonality/lyrics features, output structured JSON, and map to Dreamina prompts and storyboards.

not rated 8 6mo ago A tokens not measured