ai-gene-review: Skill for Claude Code

.claude/skills/review-function-prediction/SKILL.md

review-function-prediction is a skill for Claude Code, Codex from ai4curation/ai-gene-review. It costs 99 tokens per session (3,285 once invoked), scanned A, original, BSD-3-Clause.

A review skill for computational predictions about what genes or proteins do. It checks predicted biological functions against permitted evidence and records the result in structured YAML files.

In plain words
What is it for?
Use it to review predicted enzyme or Gene Ontology annotations from tools such as DeepECTF, CLEAN, PANTHER, or other listed prediction methods.
Why use it?
It provides a consistent way to judge biological predictions and document whether the available evidence supports them.

Skill for Claude CodeCodex

Written for Claude Code and Codex: installed under .claude/, but also agents/openai.yaml present.

This is ai4curation/ai-gene-review's own configuration. It tells Claude Code and Codex how to work on ai-gene-review itself, so it is not a mod to install elsewhere. Copy it as a starting point and replace the rules that are about this project. Everything ai-gene-review configures →

Reuse

Borrowing it

Nothing to install: this file belongs to ai4curation/ai-gene-review. Take a copy, put it at the same path in your own repository, and replace the rules that are about this project with yours.

Copy the file
curl -O https://raw.githubusercontent.com/ai4curation/ai-gene-review/main/.claude/skills/review-function-prediction/SKILL.md
Clone the repo
git clone --depth 1 https://github.com/ai4curation/ai-gene-review

Made for: Claude Code, Codex.

Wrote this? Show the measurements

A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.

agentmods badge for review-function-prediction

README.md
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Your own site
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Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.

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Your own site · 80×15
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Per session 99 Skills are progressive disclosure: only the name and description are preloaded; the body loads when the skill is used.
When invoked 3,285 The whole file, excluding the scripts and references it only reads on demand.
Security scan A 0 findings. A grade says what 26 rules found in the file — not that it is safe. Third-party audits
  • NVIDIA SkillSpector pass 7 Sept 2026
How audits are shown
Origin original No closer match found in the catalogue.
Token cost

What it costs to keep this loaded

Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.

ModelPer sessionOnce invoked
Fable 5.1 $0.00099 $0.03285
Opus 5.5 $0.00040 $0.01314
Sonnet 5.5 $0.00020 $0.00657
Haiku 4.5 $0.00010 $0.00329

Measured yesterday against content hash 4ddddf85a41f, method: parsed. Prices are Anthropic first-party input rates as of 2026-10-07, from the pricing page.

Security

Grade A, and why

review-function-prediction scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured yesterday.

A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.

Nothing flagged

None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.

.claude/skills/review-function-prediction/SKILL.md · 229 lines

How it starts

The opening of the file, as written. The whole thing — 229 lines — stays where its author put it; the contents beside it link to each section on GitHub.

Review Function Prediction

Use this skill to review computational function predictions against allowed evidence and write schema-compatible PredictionReview YAML.

the predictions are in YAML alongside the main curation review YAMLs:

genes/<TAXON>/<GENE>/<GENE>-<TOOL>-predictions-review.yaml

id: <UniProt accession>
gene_symbol: <gene symbol>
locus_tag: <locus tag if available>
taxon:
  id: NCBITaxon:<taxon id>
  label: <organism>
status: COMPLETE
description: >-
  Brief summary of the prediction review outcome, based only on the allowed
  evidence for this review mode.
source_documents:
  - <allowed file path used>
predictions:
  - source_method: <do not change>
    source_version: <do not change>
    source_reference_id: <do not change if present>
    predicted_term:
      id: <do not change>
      label: <do not change>
    predicted_term_type: <EC | GO_MF | GO_BP | GO_CC>
    review:
      assessment: <COR | CNN | LSP | UNC | PLI | NPI | REP>
      confidence_score: <0 | 1 | 2>
      error_type: <omit unless applicable>
      summary: >-
        Explain the decision in 3-8 sentences. State what allowed evidence was
        used, whether the prediction is already present in curated annotations,
        whether it is more or less specific than existing annotations, and why
        the chosen category is justified. If using UNC, explicitly say what
        evidence is missing and avoid speculation.

Selected records with no GO/EC predictions

When a selected benchmark target has no emitted GO/EC predictions in the frozen source, still write its PredictionReview sidecar with an explicit predictions: []. Use description for the summary evaluation: identify the method and snapshot, distinguish absent GO/EC output from any emitted name, location, or function text, and assess whether well-supported functions were omitted. Cite the frozen output and decisive biological sources through source_documents and references, with supporting excerpts in reference findings where applicable. status: COMPLETE can describe a completed assessment of the empty output; it does not imply the full gene review is complete.

Read the full file on GitHub · 229 lines

Files

What ships with it

1 file beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.

Changes

What this file has done since we first saw it

Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.

  1. yesterday Changed · +13 lines 4ddddf85a41f
  2. 1mo ago Changed · +24 lines 2dcaf039b70a
  3. 1mo ago Changed · +106 lines · +16 tokens per session c1f0e9569530
  4. 1mo ago First seen · 86 lines · 83 tokens per session scan A 2b502e01ff11

Subscribe to this mod's changes

review-function-prediction is a skill published in the GitHub repository ai4curation/ai-gene-review (24 stars, last pushed today), licensed BSD-3-Clause. It adds 99 tokens to every session and 3,285 once invoked, about $0.0004 per session on Opus 5.5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-08-30.

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