Getting it into your agent
One page per mod, every tool's command on it. A separate URL per tool would split the same page into five that compete with each other.
npx skills add AlterLab-IEU/AlterLab-Academic-Skills --skill alterlab-pymoogit clone --depth 1 https://github.com/AlterLab-IEU/AlterLab-Academic-SkillsWrote this? Show the measurements
A badge with what this costs and how it scanned, read live from this page, so it follows the numbers instead of freezing them. Markdown for a README, HTML for a documentation site or a project page.
[](https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-pymoo)<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-pymoo"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-pymoo/github.svg" alt="Measured on agentmods" height="20"></a>Or the 80×15 button, for a site that already has a row of RSS and ATOM ones. Only the verdict fits; the numbers stay here.
<a href="https://agentmods.dev/skills/alterlab-ieu/alterlab-academic-skills/alterlab-pymoo"><img src="https://agentmods.dev/badge/skills/alterlab-ieu/alterlab-academic-skills/alterlab-pymoo.svg" alt="Reviewed on agentmods" width="80" height="20"></a>- NVIDIA SkillSpector pass
What it costs to keep this loaded
Counted locally with the o200k_base tokenizer, which is exact for GPT models; Claude uses its own tokenizer and its counts differ. Treat this as one consistent yardstick across the catalogue rather than a bill. Prices are per million input tokens.
| Model | Per session | Once invoked |
|---|---|---|
| Fable 5.1 | $0.00083 | $0.01236 |
| Opus 5 | $0.00042 | $0.00618 |
| Sonnet 5 | $0.00017 | $0.00247 |
| Haiku 4.5 | $0.00008 | $0.00124 |
Grade A, and why
alterlab-pymoo scanned grade A with 0 findings against 26 rules in 11 categories — prompt injection, anti-refusal, data exfiltration, privilege escalation, supply chain, agent snooping, system-prompt leakage, SSRF and excessive agency — measured 7d ago.
A static scan of the body, not an audit. Every finding is printed with the line that produced it so you can judge whether it matters here. A mod is markdown that instructs an agent; that is exactly why what it instructs is worth reading.
Nothing flagged
None of the 26 patterns this scan looks for appear in this file: no shell pipes, no recursive deletes, no credential paths, no hidden text, no instruction-override or anti-refusal phrasing, no agent-config snooping. That is not a guarantee, it is the absence of the things that are checkable.
How it starts
The opening of the file, as written. The whole thing — 99 lines — stays where its author put it; the contents beside it link to each section on GitHub.
Pymoo - Multi-Objective Optimization in Python
Overview
Pymoo is a comprehensive Python framework for optimization with emphasis on multi-objective problems. Solve single and multi-objective optimization using state-of-the-art algorithms (NSGA-II/III, MOEA/D), benchmark problems (ZDT, DTLZ), customizable genetic operators, and multi-criteria decision making methods. Excels at finding trade-off solutions (Pareto fronts) for problems with conflicting objectives.
When to Use This Skill
This skill should be used when:
- Solving optimization problems with one or multiple objectives
- Finding Pareto-optimal solutions and analyzing trade-offs
- Implementing evolutionary algorithms (GA, DE, PSO, NSGA-II/III)
- Working with constrained optimization problems
- Benchmarking algorithms on standard test problems (ZDT, DTLZ, WFG)
- Customizing genetic operators (crossover, mutation, selection)
- Visualizing high-dimensional optimization results
- Making decisions from multiple competing solutions
- Handling binary, discrete, continuous, or mixed-variable problems
Core Concepts
The Unified Interface
Pymoo uses a consistent minimize() function for all optimization tasks:
from pymoo.optimize import minimize
result = minimize(
problem, # What to optimize
algorithm, # How to optimize
termination, # When to stop
seed=1,
verbose=True
)
Result object contains:
result.X: Decision variables of optimal solution(s)result.F: Objective values of optimal solution(s)result.G: Constraint violations (if constrained)result.algorithm: Algorithm object with history
Problem Types
Single-objective: One objective to minimize/maximize Multi-objective: 2-3 conflicting objectives → Pareto front Many-objective: 4+ objectives → High-dimensional Pareto front Constrained: Objectives + inequality/equality constraints Dynamic: Time-varying objectives or constraints
Core Workflow
- Pick problem type — single, multi (2-3 obj), many (4+ obj), or constrained.
- Define or select the problem — built-in via
get_problem(...), or subclassElementwiseProblemfor custom (objectives inout["F"], inequality constraintsg(x) <= 0inout["G"], equalityh(x) = 0inout["H"]). - Choose the algorithm — NSGA-II for 2-3 objectives, NSGA-III (with reference directions) for 4+, GA/DE/PSO/CMA-ES for single-objective. See the selection tables in
references/quick_reference.md. - Set termination —
('n_gen', N)orget_termination("f_tol", tol=0.001). - Run with
minimize(problem, algorithm, termination, seed=1, verbose=True). - Inspect
result.X/result.F/result.G(orresult.CVfor constraint violation). - Decide & visualize — apply MCDM to pick a preferred Pareto solution, plot with
Scatter/PCP/Petal.
What ships with it
13 files beside SKILL.md in the same directory: the scripts, references and assets a skill reads on demand. Not counted in the per-session cost; read them before you install if any of them is executable.
- evals/evals.json 4.5 KB
- references/algorithms.md 6.0 KB
- references/constraints_mcdm.md 12 KB
- references/operators.md 8.6 KB
- references/problems.md 6.9 KB
- references/quick_reference.md 4.6 KB
- references/visualization.md 9.5 KB
- references/workflows.md 8.1 KB
- scripts/custom_problem_example.py 4.7 KB runs code
- scripts/decision_making_example.py 4.5 KB runs code
- scripts/many_objective_example.py 2.0 KB runs code
- scripts/multi_objective_example.py 1.7 KB runs code
- scripts/single_objective_example.py 1.6 KB runs code
What this file has done since we first saw it
Hashed on every crawl. A supply-chain change to an agent config is a question of when, not whether, so the history is kept rather than the latest state alone.
- 7d ago First seen · 99 lines · 83 tokens per session scan A e375b8f30e2c
alterlab-pymoo is a skill published in the GitHub repository AlterLab-IEU/AlterLab-Academic-Skills (66 stars, last pushed 6d ago), licensed MIT. It adds 83 tokens to every session and 1,236 once invoked, about $0.0004 per session on Opus 5. A static security scan graded it A with 0 findings. No closer match exists in the catalogue, so it is treated as the original; first seen 2026-09-03.
Other skills, from other repositories
fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC…
astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve…
simpy
Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.
biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use…
scanpy
Standard single-cell RNA-seq analysis pipeline. Use for QC, normalization, dimensionality reduction (PCA/UMAP/t-SNE), clustering, differential expression, and visualization. Best for exploratory scRNA-seq analysis with established workflows. For deep learning models use scvi-tools; for data format questions use…
datamol
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters…